Browse Element(s) Details


OsAffx.7873.1.S1_at

Description tigr:9640.m04224
TID=OsAffx.7873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4295011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42900Os.55055.1.S1_at11/1112+26629559..26631216transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g42910NANA12+26635589..26637581Sodium/calcium exchanger protein, expressed
LOC_Os12g42920OsAffx.7872.1.S1_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42920OsAffx.7872.1.S1_x_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed
LOC_Os12g42980Os.2258.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42980OsAffx.32164.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42990OsAffx.7874.1.S1_at11/1112+26674244..26675783AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7873.1.S1_at--721--8231Chr12:26651727..26651751 (25 bp)
GGCACGTACACGGTGGACACCAAGC
LOC_Os12g42950
OsAffx.7873.1.S1_at--104--4031Chr12:26651731..26651755 (25 bp)
CGTACACGGTGGACACCAAGCGCGG
LOC_Os12g42950
OsAffx.7873.1.S1_at--884--8411Chr12:26651896..26651920 (25 bp)
GGCCGCCGGAGTGGGACACCATGGA
LOC_Os12g42950
OsAffx.7873.1.S1_at--848--6111Chr12:26651904..26651928 (25 bp)
GAGTGGGACACCATGGACGATGACG
LOC_Os12g42950
OsAffx.7873.1.S1_at--198--9371Chr12:26652022..26652046 (25 bp)
TCGACTGCGTGGAATGCGACGGCGA
LOC_Os12g42950
OsAffx.7873.1.S1_at--825--4211Chr12:26652069..26652093 (25 bp)
CCGCCGCAATGTGAGGTCCATGTCG
LOC_Os12g42950
OsAffx.7873.1.S1_at--274--4111Chr12:26652073..26652097 (25 bp)
CGCAATGTGAGGTCCATGTCGCCGT
LOC_Os12g42950
OsAffx.7873.1.S1_at--147--3511Chr12:26652087..26652111 (25 bp)
CATGTCGCCGTGTTTGGGCTCAAGT
LOC_Os12g42950
OsAffx.7873.1.S1_at--603--7631Chr12:26652122..26652146 (25 bp)
GGGAGAACTGAAGGCGACGGCTCGC
LOC_Os12g42950
OsAffx.7873.1.S1_at--499--7691Chr12:26652156..26652180 (25 bp)
GGGTCGTTCCGAGTGCCCAAGCATT
LOC_Os12g42950
OsAffx.7873.1.S1_at--1105--6691Chr12:26652161..26652185 (25 bp)
GTTCCGAGTGCCCAAGCATTTCTCA
LOC_Os12g42950
Target Sequence 
GGCACGTACACGGTGGACACCAAGCGCGGCGAGTGGAGGCGGCACGGTGGCTGGCTCCTGCCGTTCCATGGCCAGGGCTT
CTTCGACGCCGAGCTCGACGCCTGGGTCGGCCTCCCGCGCCACGGGGACACCATCTGCGCCTGCCAGGTCCCGTCCCGCG
GCGGCGCGCGGCCGCCGGAGTGGGACACCATGGACGATGACGACGTGGTGCCGTCGTGGAAGAAGAGCCGCCGCCGCCCC
GGCGGCCGTCGACGCGCCACGCTCACCTACATGGGCGACAGCAAGTTCTGCGTCGTCGACTGCGTGGAATGCGACGGCGA
CGACGGCGGCGGCGTGGTCACGCCGCCGCAATGTGAGGTCCATGTCGCCGTGTTTGGGCTCAAGTACAACCGGCGGGGAG
AACTGAAGGCGACGGCTCGCCGCGCCGCCGGGTCGTTCCGAGTGCCCAAGCATTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis