Browse Element(s) Details


Os.55055.1.S1_at

Description gb:AK107389.1
DB_XREF= gi:32992598
TID=Os.55055.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C10, full insert sequence.
FL= gb:AK107389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4290011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42870Os.51822.1.S1_at11/1112+26602092..26606936dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os12g42884Os.12374.2.S1_x_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_a_at11/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.12374.1.S1_at7/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884OsAffx.29729.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42884Os.55372.1.S1_at1/1112+26611366..266293865-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase, putative, expressed
LOC_Os12g42900Os.55055.1.S1_at11/1112+26629559..26631216transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g42910NANA12+26635589..26637581Sodium/calcium exchanger protein, expressed
LOC_Os12g42920OsAffx.7872.1.S1_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42920OsAffx.7872.1.S1_x_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55055.1.S1_at--722--5051Chr12:26630095..26630119 (25 bp)
GCAGCAACCGTCACAGCGGTATTGG
LOC_Os12g42900
Os.55055.1.S1_at--70--8311Chr12:26630059..26630083 (25 bp)
GGCTATCACCCCTGAACCAGCAAAG
LOC_Os12g42900
Os.55055.1.S1_at--195--5951Chr12:26629999..26630023 (25 bp)
GAGCACAAAAGACTCGCCACGGCCG
LOC_Os12g42900
Os.55055.1.S1_at--491--5131Chr12:26629950..26629974 (25 bp)
GCAAACGGCGGCGATCCAAGGCTAC
LOC_Os12g42900
Os.55055.1.S1_at--10--6351Chr12:26629938..26629962 (25 bp)
GATCCAAGGCTACCGGCGACTACGC
LOC_Os12g42900
Os.55055.1.S1_at--311--2031Chr12:26629920..26629944 (25 bp)
ACTACGCCGCTTTCGAAGCAGAAGA
LOC_Os12g42900
Os.55055.1.S1_at--344--9411Chr12:26629730..26629754 (25 bp)
TCGTCGGGATCATCGTATCCGTGTG
LOC_Os12g42900
Os.55055.1.S1_at--138--511Chr12:26629719..26629743 (25 bp)
ATCGTATCCGTGTGGCGCACCTTGA
LOC_Os12g42900
Os.55055.1.S1_at--338--5091Chr12:26629703..26629727 (25 bp)
GCACCTTGAGCTCTTGACTCTTGTG
LOC_Os12g42900
Os.55055.1.S1_at--726--5711Chr12:26629688..26629712 (25 bp)
GACTCTTGTGTCTCTGACCAAACAG
LOC_Os12g42900
Os.55055.1.S1_at--687--5851Chr12:26629673..26629697 (25 bp)
GACCAAACAGATGCCAAATGTGAAT
LOC_Os12g42900
Target Sequence 
GCAGCAACCGTCACAGCGGTATTGGACCCCGCCTCCGGCTATCACCCCTGAACCAGCAAAGCCCGCCGCCGGCAAGCCGA
CATCCTCGTCGCCGCCGAGCACAAAAGACTCGCCACGGCCGCCGCTTCCTGCGCCAAGTCCAGCAGCAAACGGCGGCGAT
CCAAGGCTACCGGCGACTACGCCGCTTTCGAAGCAGAAGAGGAAAGAGGAGAAGAGAGAGAAGGAGGCGCAAGAAATGGG
TCGAGCTGGAGCGGCAGCAGCGGAGGAGGAGCGGCCGCCGGCGACGGCGACGGCGAGCGGAGGTGGGAGGAGGGAGGCGG
AGGAGAGGAGGCTGATGGTGAACATGGCGGCGGCGGCGGCGGTGCTCGTCGGGATCATCGTATCCGTGTGGCGCACCTTG
AGCTCTTGACTCTTGTGTCTCTGACCAAACAGATGCCAAATGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis