Browse Element(s) Details


Os.11382.1.S1_at

Description gb:AK101421.1
DB_XREF= gi:32986630
TID=Os.11382.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038C04, full insert sequence.
FL= gb:AK101421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4297011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42910NANA12+26635589..26637581Sodium/calcium exchanger protein, expressed
LOC_Os12g42920OsAffx.7872.1.S1_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42920OsAffx.7872.1.S1_x_at11/1112+26638839..26640020hypothetical protein
LOC_Os12g42930OsAffx.20095.1.S1_at11/1112+26641060..26644749hypothetical protein
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed
LOC_Os12g42980Os.2258.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42980OsAffx.32164.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42990OsAffx.7874.1.S1_at11/1112+26674244..26675783AT hook motif-containing protein, putative
LOC_Os12g43000Os.49981.2.S1_x_at11/1112+26681777..26684559expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11382.1.S1_at--832--7551Chr12:26662325..26662349 (25 bp)
GGGCCTAAGACGCTATGCAATGCTT
LOC_Os12g42970
Os.11382.1.S1_at--291--9111Chr12:26662377..26662401 (25 bp)
TGCTGCCGGAATACAGGCCTGCTAA
LOC_Os12g42970
Os.11382.1.S1_at--754--8411Chr12:26662392..26662416 (25 bp)
GGCCTGCTAATAGTCCAACTTTTGT
LOC_Os12g42970
Os.11382.1.S1_at--1122--7351Chr12:26662419..26662443 (25 bp)
GTGACATACACTCCAATTCTCATAA
LOC_Os12g42970
Os.11382.1.S1_at--805--1951Chr12:26662490..26662514 (25 bp)
ACTGGTGGTCGGGAACGTCTCGATC
LOC_Os12g42970
Os.11382.1.S1_at--601--4011Chr12:26662505..26662529 (25 bp)
CGTCTCGATCTGTTGCGTTTAGTTT
LOC_Os12g42970
Os.11382.1.S1_at--945--3751Chr12:26662584..26662608 (25 bp)
CTCATTGAATTTTAGGCGGGCTCCT
LOC_Os12g42970
Os.11382.1.S1_at--44--8991Chr12:26662718..26662742 (25 bp)
TGAACTCTTTGTTAGCTCTAGCCGT
LOC_Os12g42970
Os.11382.1.S1_at--642--4771Chr12:26662732..26662756 (25 bp)
GCTCTAGCCGTTTTTTAACTTGAGA
LOC_Os12g42970
Os.11382.1.S1_at--949--1731Chr12:26662825..26662849 (25 bp)
ACCATTGTCTTGCAGCATGCTTGTT
LOC_Os12g42970
Os.11382.1.S1_at--1022--632Chr12:26662841..26662865 (25 bp)
ATGCTTGTTCTGTGATACTCGCTGA
LOC_Os12g42970
Target Sequence 
GGGCCTAAGACGCTATGCAATGCTTGCGGTGTGAGGTTCAAGTCTGGCAGGCTGCTGCCGGAATACAGGCCTGCTAATAG
TCCAACTTTTGTGAGTGACATACACTCCAATTCTCATAAGAAGGTCATGCAGCTGAGGAATTCTGTTCCACACCCAAGGA
AGTGAACTGGTGGTCGGGAACGTCTCGATCTGTTGCGTTTAGTTTTAGGAACTCTTCAGTTGTAGAAGTAAGCTGATAGT
GAAGAACATCTTAATCTGTCTCATTGAATTTTAGGCGGGCTCCTTGGTCGTAGAAGTGAGCTGATAATCACATCTCAATC
TGCTGCATTGAGCTTTTAGGGGCTCTCAGCCTTAGATGCTGAGAAAACGAAAGCAGAATCTAGTTAGGCGTCATGAACTC
TTTGTTAGCTCTAGCCGTTTTTTAACTTGAGAAATTAATCTGCTAGTTGTTGGAGATCATCAGTTTAATACCAATGGGTG
GTTGCTANCCTTNGTTATCCCACCATTGTCTTGCAGCATGCTTGTTCTGTGATACTCGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis