Browse Element(s) Details


OsAffx.7874.1.S1_at

Description tigr:9640.m04229
TID=OsAffx.7874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4299011/11AT hook motif-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42940Os.20602.2.S1_x_at11/1112+26647548..26649730hAT family dimerisation domain containing protein
LOC_Os12g42950OsAffx.7873.1.S1_at11/1112+26651130..26652215hypothetical protein
LOC_Os12g42960Os.24035.1.S1_at10/1112+26653186..26655802expressed protein
LOC_Os12g42970Os.11382.1.S1_at11/1112+26659916..26662907GATA zinc finger family protein, expressed
LOC_Os12g42980Os.2258.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42980OsAffx.32164.1.S1_at11/1112+26665045..26669734Cysteine synthase, putative, expressed
LOC_Os12g42990OsAffx.7874.1.S1_at11/1112+26674244..26675783AT hook motif-containing protein, putative
LOC_Os12g43000Os.49981.2.S1_x_at11/1112+26681777..26684559expressed protein
LOC_Os12g43020Os.31497.2.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43020Os.45212.1.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43034NANA12+26695297..26698037retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7874.1.S1_at--483--3091Chr12:26674840..26674864 (25 bp)
AATAGCATGCCAACAGATCGACCTG
LOC_Os12g42990
OsAffx.7874.1.S1_at--977--6891Chr12:26674790..26674814 (25 bp)
GTATCTTTTGTTACCTGCTCAGGAA
LOC_Os12g42990
OsAffx.7874.1.S1_at--482--1291Chr12:26674721..26674745 (25 bp)
AGATGCCTCAGAATTACCAGCCTAT
LOC_Os12g42990
OsAffx.7874.1.S1_at--852--9971Chr12:26674707..26674731 (25 bp)
TACCAGCCTATTTGTGTCAGCGAGC
LOC_Os12g42990
OsAffx.7874.1.S1_at--371--8731Chr12:26674693..26674717 (25 bp)
TGTCAGCGAGCAATTTTGGCCCCAA
LOC_Os12g42990
OsAffx.7874.1.S1_at--957--291Chr12:26674578..26674602 (25 bp)
ATACCACAGCTAACTATTGCACTCT
LOC_Os12g42990
OsAffx.7874.1.S1_at--536--2771Chr12:26674551..26674575 (25 bp)
AAGACCTGTATCCTCCAGAGTTTCT
LOC_Os12g42990
OsAffx.7874.1.S1_at--563--6071Chr12:26674534..26674558 (25 bp)
GAGTTTCTCAACACGGTTCGCATGA
LOC_Os12g42990
OsAffx.7874.1.S1_at--198--711Chr12:26674513..26674537 (25 bp)
ATGAGTGGCCTTCCAGATCACCATT
LOC_Os12g42990
OsAffx.7874.1.S1_at--950--5791Chr12:26674403..26674427 (25 bp)
GACGCAGCTCACTCATCGTGTAATT
LOC_Os12g42990
OsAffx.7874.1.S1_at--277--8911Chr12:26674284..26674308 (25 bp)
TGAGACGTCGTCAATTTCCAGTGCG
LOC_Os12g42990
Target Sequence 
AATAGCATGCCAACAGATCGACCTGACACAACATGGATCCAAATTCCAGAGTATCTTTTGTTACCTGCTCAGGAAAGAAA
CCTTACAGATGCCTCAGAATTACCAGCCTATTTGTGTCAGCGAGCAATTTTGGCCCCAACAAATGAGGTGGCTGCTGCTA
TAAATGCTCAGATTATTGGCCAGATAGCTAATGAGGAAATGTCATATTATAGCTTTGATACAATTGATGATACCACAGCT
AACTATTGCACTCTTCAAGACCTGTATCCTCCAGAGTTTCTCAACACGGTTCGCATGAGTGGCCTTCCAGATCACCATTT
ACAACTTAAGATTGGTGTCCCAATAATGTTACTTAGAAATTTGAGTCCATCCAAGGGCTTATACAATGGAACTAGACTTA
TTGTGACGCAGCTCACTCATCGTGTAATTGAAGCCCAAATAATAACAGGAAGCGCTAAAGGTTCTAAAGCTTATATCCCT
AGAATTGTTTCTGTTTCGACAGACCCGAAATGGCCTTTCAAGATGAGACGTCGTCAATTTCCAGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis