Browse Element(s) Details


Os.50.4.S1_at

Description gb:NM_188111.1
DB_XREF= gi:34903305
TID=Os.50.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g194501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19420NANA11+11141225..11145751retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19430NANA11+11151535..11157025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19440NANA11+11160306..11161732transposon protein, putative, unclassified
LOC_Os11g19450OsAffx.7153.1.S1_at9/1111+11170223..11174667hypothetical protein
LOC_Os11g19450Os.50.4.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19450OsAffx.29729.1.S1_at1/1111+11170223..11174667hypothetical protein
LOC_Os11g19454NANA11+11177360..11179141hypothetical protein
LOC_Os11g19460Os.16631.1.S1_x_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19460OsAffx.31060.1.S1_s_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19470NANA11+11188542..11188862hypothetical protein
LOC_Os11g19480Os.51067.1.S1_x_at11/1111+11190348..11192066Leucine Rich Repeat family protein, expressed
LOC_Os11g19490Os.55572.1.S1_at11/1111+11199239..11201659Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50.4.S1_at--415--1791Chr01:9811009..9811033 (25 bp)
ACCGATAAGATCGTAGTCGTGGTAT
NONE
Os.50.4.S1_at--1072--9492Chr04:8461134..8461154 (21 bp)
TCTCCCGGCGACTTGACTTCGTGTA
NONE
Os.50.4.S1_at--911--2051Chr01:9810960..9810984 (25 bp)
ACTTCGTGTACTCCAGCTTCATAAG
NONE
Os.50.4.S1_at--945--10773Chr06:15730623..15730759 (25 bp)
TTGATCTCCAAATTCCTACGGCGTA
NONE
Os.50.4.S1_at--665--9253Chr10:1620626..1620650 (25 bp)
TCCTACGGCGTACACGGGAACAATC
NONE
Os.50.4.S1_at--863--5493Chr10:17505117..17505137 (21 bp)
GAACAATCTGTGTACGTGAAGCCGA
NONE
Os.50.4.S1_at--250--2671Chr01:9809519..9809542 (24 bp)
AAGCCGATTGCCTTCATATCATCAT
NONE
Os.50.4.S1_at--748--23735Chr12:9340093..9340113 (21 bp)
AAACCCTATCGACATCGGCTGATAT
NONE
Os.50.4.S1_at--231--3951Chr01:9809271..9809441 (25 bp)
CGGCTTATATATGCCTTATCTGTAA
NONE
Os.50.4.S1_at--974--9411Chr01:9809165..9809189 (25 bp)
TCGTGCGGAGCGGATACGCGCCCTA
NONE
Os.50.4.S1_at--16--10671Chr01:9809075..9809099 (25 bp)
TTCCTCCTCCTCAAAGGCAAACTTT
NONE
Target Sequence 
ACCGATAAGATCGTAGTCGTGGTATTCGACGAGATCTCCCGGCGACTTGACTTCGTGTACTCCAGCTTCATAAGCTATGG
TGGGGGTCCTTGTTATACCGTGGATCATCTTGATCTCCAAATTCCTACGGCGTACACGGGAACAATCTGTGTACGTGAAG
CCGATTGCCTTCATATCATCATCTACATTGAACATATAGCCGATAGCTCAAAACCCTATCGACATCGGCTGATATCGGCA
TCGGCTGGGATTACTCCATCGGCTTATATATGCCTTATCTGTAACCATGACAGCGGGGGGAATGAGACGACCGTCGACGC
GGTGCAGCTCGGGCTCGGGCTCCATGGCTATCGCCCCACTCGTGCTCGTGCGGAGCGGATACGCGCCCTACTCGCCGATG
CCCTTGCCGAGGAGCTCCCCTCCCGCATCGCCCCTTCCCCATCCGCCGTCATGCCTTCCTCCTCCTCAAAGGCAAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis