Browse Element(s) Details


Os.5008.1.S1_at

Description gb:AK106860.1
DB_XREF= gi:32992069
TID=Os.5008.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C02, full insert sequence.
FL= gb:AK106860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0531011/11Fibronectin type III domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05260Os.53756.1.S1_at9/115+2562822..2568136DNA repair helicase UVH6, putative, expressed
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed
LOC_Os05g05280Os.53552.1.S1_at11/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05280Os.2852.1.S1_at1/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05290Os.55368.1.S1_at11/115+2583464..2584282expressed protein
LOC_Os05g05300NANA5+2587556..2590142group II intron splicing factor CRS1, putative, expressed
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein
LOC_Os05g05330Os.10713.1.S1_at7/115+2603989..2608259expressed protein
LOC_Os05g05340OsAffx.14554.1.S1_at11/115+2609570..2610612hypothetical protein
LOC_Os05g05354OsAffx.14555.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354Os.10892.1.S1_at11/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_at3/115+2616872..2627073expressed protein
LOC_Os05g05354OsAffx.20913.1.S1_x_at3/115+2616872..2627073expressed protein
LOC_Os05g05354Os.16798.1.S1_at2/115+2616872..2627073expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5008.1.S1_at--389--5331Chr05:2591394..2591418 (25 bp)
GAAGTTCTTGACCTGGTTTAGTCTA
LOC_Os05g05310
Os.5008.1.S1_at--620--4391Chr05:2591310..2591334 (25 bp)
GCCAAGTGGTCTGGCTGAGCAGCTT
LOC_Os05g05310
Os.5008.1.S1_at--228--5931Chr05:2591294..2591318 (25 bp)
GAGCAGCTTGTTGATTCCTTTGGAG
LOC_Os05g05310
Os.5008.1.S1_at--163--6551Chr05:2591193..2591217 (25 bp)
GATTTTGCTAACTCATTGATATCCT
LOC_Os05g05310
Os.5008.1.S1_at--1152--3451Chr05:2591148..2591172 (25 bp)
CAGTGACATCTGTTTCGGTTGACCA
LOC_Os05g05310
Os.5008.1.S1_at--709--9431Chr05:2591134..2591158 (25 bp)
TCGGTTGACCACTACATTTAGGATT
LOC_Os05g05310
Os.5008.1.S1_at--193--10451Chr05:2591064..2591088 (25 bp)
TTAGGCACCAAATAGGCTGCACCAA
LOC_Os05g05310
Os.5008.1.S1_at--294--3451Chr05:2590988..2591012 (25 bp)
CAGTAGTTTCTAGTTTCCTGTCGAA
LOC_Os05g05310
Os.5008.1.S1_at--90--3051Chr05:2590964..2590988 (25 bp)
AATCTGAAAGGTCTCGTGGTGTTGT
LOC_Os05g05310
Os.5008.1.S1_at--334--7751Chr05:2590947..2590971 (25 bp)
GGTGTTGTATCTCTTGCTACCTCTG
LOC_Os05g05310
Os.5008.1.S1_at--316--8311Chr05:2590883..2590907 (25 bp)
GGCTAGACAGGCTTATATTCGTGTA
LOC_Os05g05310
Target Sequence 
GAAGTTCTTGACCTGGTTTAGTCTAAGATCAACGGAGAATGNCCGTAGAGTTGTAACTNCATTCATCAAAACACTAATCA
ATGAGCCAAGTGGTCTGGCTGAGCAGCTTGTTGATTCCTTTGGAGAAGCCATAAACTGCAAGAGGCAACGAAATGGTTTC
TGCAATGAGCTTTGGCATGATGACAAAGGACAATAATTCAAGATTTTGCTAACTCATTGATATCCTACAGTTTTTATGAT
CAAATGCAGTGACATCTGTTTCGGTTGACCACTACATTTAGGATTCAACAGCAAAAGAGGGAGGAGGACATTGATGGAGG
TGACAAATTTTTAGGCACCAAATAGGCTGCACCAAAAGAATTCTTTTTCCACCAAGAATTTGTGGAAATATTTTTTTTCA
TTGGTTCAGTAGTTTCTAGTTTCCTGTCGAAATCTGAAAGGTCTCGTGGTGTTGTATCTCTTGCTACCTCTGCTAGGTAA
ACTTACGAATAATTTTTTGGCACTAGATATTGGCTAGACAGGCTTATATTCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis