Browse Element(s) Details


Os.5009.1.S1_at

Description gb:AK066467.1
DB_XREF= gi:32976485
TID=Os.5009.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067F08, full insert sequence.
FL= gb:AK066467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0639010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed
LOC_Os02g06350OsAffx.18139.2.S1_at10/112+3171932..3174989hypothetical protein
LOC_Os02g06350Os.55379.1.S1_x_at1/112+3171932..3174989hypothetical protein
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5009.1.S1_at--466--5011NONE
GCAGGCGATTCTCTTGGCCATAAGA
NONE
Os.5009.1.S1_at--1109--531Chr02:3191846..3191870 (25 bp)
ATCCCAAGGTGGTGAACAGGCTCTC
LOC_Os02g06390
Os.5009.1.S1_at--1067--2471Chr02:3191832..3191856 (25 bp)
AACAGGCTCTCATGCAGACGCTGAA
LOC_Os02g06390
Os.5009.1.S1_at--136--1671Chr02:3191775..3191799 (25 bp)
AGCCCAGCCCTAGTGTTGATGATCT
LOC_Os02g06390
Os.5009.1.S1_at--949--9471Chr02:3191677..3191701 (25 bp)
TCTGACCCTGTCATGATGCTGGATT
LOC_Os02g06390
Os.5009.1.S1_at--821--2331Chr02:3191536..3191560 (25 bp)
AAAGATGAGCACCTGGCCTACTGGT
LOC_Os02g06390
Os.5009.1.S1_at--91--9151Chr02:3191512..3191536 (25 bp)
TGCGGGACTGCATGATCCTGGCGAT
LOC_Os02g06390
Os.5009.1.S1_at--1045--8371Chr02:3191493..3191517 (25 bp)
GGCGATGCCCATAATTATACCTGTG
LOC_Os02g06390
Os.5009.1.S1_at--789--8831Chr02:3191431..3191455 (25 bp)
TGATCTTCTGTTACACCGAGGCAAG
LOC_Os02g06390
Os.5009.1.S1_at--851--9831Chr02:3191377..3191401 (25 bp)
TAAAGCTTGCCATATCCCTGTAATC
LOC_Os02g06390
Os.5009.1.S1_at--382--551Chr02:3191364..3191388 (25 bp)
ATCCCTGTAATCTGTTCATCCTGTA
LOC_Os02g06390
Target Sequence 
GCAGGCGATTCTCTTGGCCATAAGATCCCAAGGTGGTGAACAGGCTCTCATGCAGACGCTGAACCGTGCACGGGAACTCT
ACAGGCAAAGATCACAGCCCAGCCCTAGTGTTGATGATCTCGCTTCTTTGCTTGCACAATGTGCTATAGCAGAGTCGCAG
TCAACAAACACTAATCCTCAACAAGTACCTGGCTCTGACCCTGTCATGATGCTGGATTCTGATGAAGTCTGCATACTTGC
TGAGAGTGGAAGGAAGCAGATAATTTTNGATGCTTTTGCTGACGGCAGCAGCTTCATTTGCTTGAAATGTGGTGGGCTGT
TTNGCNCCTCGCGCAAAGATGAGCACCTGGCCTACTGGTGCGGGACTGCATGATCCTGGCGATGCCCATAATTATACCTG
TGGCCACCCCAGTCAATGATCATGGTNCCCGTGAGATTTTGATCTTCTGTTACACCGAGGCAAGNGCATTGCCAATGTTG
GACATTGTGTGGATAAAGCTTGCCATATCCCTGTAATCTGTTCATCCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis