Browse Element(s) Details


Os.501.1.S1_at

Description gb:AK102537.1
DB_XREF= gi:32987746
TID=Os.501.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0462H08.24 (P0462H08.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096I22, full insert sequence.
FL= gb:AK102537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1548011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15470Os.12672.1.S1_a_at11/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15470Os.12672.3.S1_at10/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15480Os.501.1.S1_at11/111+8688631..8696430protein kinase, putative, expressed
LOC_Os01g15490Os.10320.1.S1_x_at11/111+8697966..8705373phosphoadenosine phosphosulfate, putative, expressed
LOC_Os01g15500OsAffx.23260.1.S1_at11/111+8710942..8711923hypothetical protein
LOC_Os01g15510OsAffx.10015.1.S1_s_at11/111+8712257..8713650hypothetical protein
LOC_Os01g15520Os.46094.1.S1_at6/111+8714655..8717700hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006468biological_processprotein amino acid phosphorylation
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0004672molecular_functionprotein kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.501.1.S1_at--711--1891Chr01:8689186..8689210 (25 bp)
ACTCGTGTCGGCATTCAAGGGTTCA
LOC_Os01g15480
Os.501.1.S1_at--926--10331Chr01:8689108..8689132 (25 bp)
TTTACCTCGCTGTGGTTGAGCCGAA
LOC_Os01g15480
Os.501.1.S1_at--460--2771Chr01:8689027..8689051 (25 bp)
AAGAGAGGGCCTCAGCCTTGTATTT
LOC_Os01g15480
Os.501.1.S1_at--34--3251Chr01:8688984..8689008 (25 bp)
CAAGCTATGATCATGGGTTCTCACC
LOC_Os01g15480
Os.501.1.S1_at--387--5431Chr01:8688940..8688964 (25 bp)
GAACCATCCGATTGGCTGTGTGATC
LOC_Os01g15480
Os.501.1.S1_at--934--7511Chr01:8688898..8688922 (25 bp)
GTGGAGCTGCTGTTCTTTCAGTATA
LOC_Os01g15480
Os.501.1.S1_at--586--10831Chr01:8688844..8688868 (25 bp)
TTGTGGCCAAAACCCTTCCTGTATT
LOC_Os01g15480
Os.501.1.S1_at--1128--8751Chr01:8688825..8688849 (25 bp)
TGTATTTCCCCTGTGCCAATTTTGG
LOC_Os01g15480
Os.501.1.S1_at--611--6831Chr01:8688795..8688819 (25 bp)
GTTTCATCGGTTTTCAGTTTCTCAC
LOC_Os01g15480
Os.501.1.S1_at--306--6871Chr01:8688732..8688756 (25 bp)
GTATATTTGTACACTCCCTTTTACT
LOC_Os01g15480
Os.501.1.S1_at--871--2351Chr01:8688664..8688688 (25 bp)
AAAGCTCTGTGAATCTGTGAACCAA
LOC_Os01g15480
Target Sequence 
ACTCGTGTCGGCATTCAAGGGTTCACATGATGGCTGCCTTGCTGACGCCGCCTCATATTTGGGCGCTGAACTGCAGCGTT
TACCTCGCTGTGGTTGAGCCGAAGTTTGGTCAGGTGCTGGCTTGGTTGGCATTGTGCAAGTGATGTTCATAGGGATCATA
AGAGAGGGCCTCAGCCTTGTATTTCTTCACCGTTTCTTGCACCAAGCTATGATCATGGGTTCTCACCATCCGAAGTGATG
ACTGATGAACCATCCGATTGGCTGTGTGATCATTTATCTATATGCAACGTGGAGCTGCTGTTCTTTCAGTATACCATTTC
TGGCCAAATCTGGAGAGGCAGCTTGTGGCCAAAACCCTTCCTGTATTTCCCCTGTGCCAATTTTGGTTGGCGTTTCATCG
GTTTTCAGTTTCTCACCATGTAATGCTGTAGAGTTTCATAGCCCTTAAAATCATGTATATTTGTACACTCCCTTTTACTT
TACCAAGCAACGGGGTGGAAATTTATTGTTATGAATGCCTGTAAAGCTCTGTGAATCTGTGAACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis