Browse Element(s) Details


Os.50134.2.S1_at

Description gb:AK119929.1
DB_XREF= gi:37989552
TID=Os.50134.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A05, full insert sequence.
FL= gb:AK119929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4973010/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49700NANA5+28416382..28417280AP2 domain containing protein, expressed
LOC_Os05g49710OsAffx.21249.1.S1_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49710Os.17546.2.S1_x_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49720NANA5+28427397..28429278hypothetical protein
LOC_Os05g49730Os.50134.1.S1_at11/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49730Os.50134.2.S1_at10/115+28440543..28442743Protein phosphatase 2C containing protein, expressed
LOC_Os05g49740Os.54298.1.S1_at11/115+28450941..28453653pentatricopeptide, putative, expressed
LOC_Os05g49750Os.18409.1.S1_at11/115+28456444..28460577expressed protein
LOC_Os05g49760Os.2326.1.S1_s_at11/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed
LOC_Os05g49760OsAffx.4669.1.S1_at9/115+28464299..28468696Isocitrate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50134.2.S1_at--714--2891Chr05:28441958..28441982 (25 bp)
AAGGTACGCTACGTGGCACTCCGTA
LOC_Os05g49730
Os.50134.2.S1_at--347--3331Chr05:28441942..28441966 (25 bp)
CACTCCGTACAACTACTTCTTTATA
LOC_Os05g49730
Os.50134.2.S1_at--480--8011Chr05:28441908..28441932 (25 bp)
GGATGGCCAAATGTTATTCGTGTAA
LOC_Os05g49730
Os.50134.2.S1_at--426--3991Chr05:28441890..28441914 (25 bp)
CGTGTAATCCATGGTACTCGTGTAC
LOC_Os05g49730
Os.50134.2.S1_at--114--7031Chr05:28441869..28441893 (25 bp)
GTACATTTAGCTCTGATTGCCGTCA
LOC_Os05g49730
Os.50134.2.S1_at--663--1291Chr05:28441829..28441853 (25 bp)
AGATCCGTACGTGGCATGCTTACTA
LOC_Os05g49730
Os.50134.2.S1_at--208--1211Chr05:28441786..28441810 (25 bp)
AGTTTGATCTTTCGAATGTTCGCCA
LOC_Os05g49730
Os.50134.2.S1_at--989--711Chr05:28441771..28441795 (25 bp)
ATGTTCGCCAAGGACGCAGGTAGTA
LOC_Os05g49730
Os.50134.2.S1_at--449--10291Chr05:28441740..28441764 (25 bp)
TTTGCCCATGTAACTATAGCTTGAT
LOC_Os05g49730
Os.50134.2.S1_at--558--591Chr05:28441701..28441725 (25 bp)
ATGCCATTATCGTGTACTTCAATTC
LOC_Os05g49730
Os.50134.2.S1_at--793--231NONE
ATATTTCCTGATACTGTCGCTTGGG
NONE
Target Sequence 
AAGGTACGCTACGTGGCACTCCGTACAACTACTTCTTTATAATGATATATGGATGGCCAAATGTTATTCGTGTAATCCAT
GGTACTCGTGTACATTTAGCTCTGATTGCCGTCAATTAATTTTTTGGTTAGATCCGTACGTGGCATGCTTACTACTCCAT
AGTACTGTACCTAGTTTGATCTTTCGAATGTTCGCCAAGGACGCAGGTAGTAGGAAATTTTGCCCATGTAACTATAGCTT
GATGCTAACAGTGCATTATGCCATTATCGTGTACTTCAATTCAAAATATTTCCTGATACTGTCGCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50134.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis