Browse Element(s) Details


Os.50175.2.S1_at

Description gb:AJ491816.1
DB_XREF= gi:21628680
GEN=hkt4
TID=Os.50175.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50175 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for putative sodium transporter (hkt4 gene).
PROD=putative sodium transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5182011/11Cation transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein
LOC_Os04g51810OsAffx.4151.1.S1_at11/114+30496303..30498019hypothetical protein
LOC_Os04g51820Os.50175.2.S1_at11/114+30505610..30507895Cation transport protein, expressed
LOC_Os04g51830Os.50365.1.S1_at11/114+30515100..30520251Cation transport protein, expressed
LOC_Os04g51840NANA4+30524485..30527574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g51850NANA4+30529061..30530852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g51860NANA4+30531682..30533075transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0015081molecular_functionsodium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50175.2.S1_at--232--2671Chr04:30506673..30506697 (25 bp)
AAGCCGGTGAATCTATCCTTGATAT
LOC_Os04g51820
Os.50175.2.S1_at--814--231Chr04:30506652..30506676 (25 bp)
ATATATCAACACTTTCTCCATCAAC
LOC_Os04g51820
Os.50175.2.S1_at--1117--10251Chr04:30506219..30506641 (25 bp)
TTTGCAGTCGTCATGTACCTTCCTT
LOC_Os04g51820
Os.50175.2.S1_at--977--6331Chr04:30506192..30506216 (25 bp)
GATGCTTCATTTCTCACTGCCAATG
LOC_Os04g51820
Os.50175.2.S1_at--974--8831Chr04:30506166..30506190 (25 bp)
TGATAACCAGCCCTTGACAGATAAA
LOC_Os04g51820
Os.50175.2.S1_at--72--3211Chr04:30506077..30506101 (25 bp)
CAATGTTCACATTCCTGGCATGCAT
LOC_Os04g51820
Os.50175.2.S1_at--136--6471Chr04:30505770..30506013 (25 bp)
GATAATCAGCGCTTTCGGCAATGTA
LOC_Os04g51820
Os.50175.2.S1_at--45--6931Chr04:30505748..30505772 (25 bp)
GTAGGCTACTCACTAGGATACAGTT
LOC_Os04g51820
Os.50175.2.S1_at--828--8811Chr04:30505714..30505738 (25 bp)
TGTTGAAGCCTGATGCCACTTGCAA
LOC_Os04g51820
Os.50175.2.S1_at--845--2311Chr04:30505691..30505715 (25 bp)
AAAGATGCTTCCTACGGGTTCGTCG
LOC_Os04g51820
Os.50175.2.S1_at--300--291Chr04:30505640..30505664 (25 bp)
ATAGTTATCCTGGTGATGTTCCTGG
LOC_Os04g51820
Target Sequence 
AAGCCGGTGAATCTATCCTTGATATATCAACACTTTCTCCATCAACTCTGTTGCTATTTGCAGTCGTCATGTACCTTCCT
TCCGATGCTTCATTTCTCACTGCCAATGCTGATAACCAGCCCTTGACAGATAAAAAGACAAACTCGATTAGCAGAGCACT
GTGGAGGAATTTTACCGTTAACAAGCTTTCTTGTTTAGCAATGTTCACATTCCTGGCATGCATAACAGAAAGGAAGTCAA
TTTCTTCTGATCCACTAAATTTCAACATCTTCAGCATAGTTTTTGAGATAATCAGCGCTTTCGGCAATGTAGGCTACTCA
CTAGGATACAGTTGCCAGAAGTTGTTGAAGCCTGATGCCACTTGCAAAGATGCTTCCTACGGGTTCGTCGGCAGGTGGAC
CGAGGAGGGTAAGCTGATAGTTATCCTGGTGATGTTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50175.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis