Browse Element(s) Details


OsAffx.4151.1.S1_at

Description tigr:9632.m05010
TID=OsAffx.4151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5181011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein
LOC_Os04g51810OsAffx.4151.1.S1_at11/114+30496303..30498019hypothetical protein
LOC_Os04g51820Os.50175.2.S1_at11/114+30505610..30507895Cation transport protein, expressed
LOC_Os04g51830Os.50365.1.S1_at11/114+30515100..30520251Cation transport protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4151.1.S1_at--229--4091Chr04:30497794..30497818 (25 bp)
CGACCAGCTGCCATTCGGCGTGGAG
LOC_Os04g51810
OsAffx.4151.1.S1_at--1142--3451Chr04:30496823..30496846 (24 bp)
CAGGTTTCCCACCAATCACTTAGGA
LOC_Os04g51810
OsAffx.4151.1.S1_at--358--1691Chr04:30496813..30496837 (25 bp)
ACCAATCACTTAGGAAAACATGCAA
LOC_Os04g51810
OsAffx.4151.1.S1_at--796--2411Chr04:30496783..30496807 (25 bp)
AAAAAGGTTACATGTGCAGGTCGCA
LOC_Os04g51810
OsAffx.4151.1.S1_at--70--791Chr04:30496663..30496796 (25 bp)
ATGTGCAGGTCGCACTATGCTCCAA
LOC_Os04g51810
OsAffx.4151.1.S1_at--941--5011Chr04:30496659..30496792 (25 bp)
GCAGGTCGCACTATGCTCCAAATGG
LOC_Os04g51810
OsAffx.4151.1.S1_at--154--7231Chr04:30496655..30496788 (25 bp)
GTCGCACTATGCTCCAAATGGTGGT
LOC_Os04g51810
OsAffx.4151.1.S1_at--745--2291Chr04:30496640..30496664 (25 bp)
AAATGGTGGTGCACCAGTGGTGTAC
LOC_Os04g51810
OsAffx.4151.1.S1_at--595--7751Chr04:30496622..30496646 (25 bp)
GGTGTACTGGTGTCCCAATCAACCC
LOC_Os04g51810
OsAffx.4151.1.S1_at--311--7751Chr04:30496614..30496638 (25 bp)
GGTGTCCCAATCAACCCGTATATGG
LOC_Os04g51810
OsAffx.4151.1.S1_at--812--3071Chr04:30496606..30496630 (25 bp)
AATCAACCCGTATATGGCAAGAATA
LOC_Os04g51810
Target Sequence 
CGACCAGCTGCCATTCGGCGTGGAGGCGATGGATCCGGCCGCGGACGGCCAGATCCAGCCAGGTTTCCCACCAATCACTT
AGGAAAACATGCAAAGGATAAAAAGGTTACATGTGCAGGTCGCACTATGCTCCAAATGGTGGTGCACCAGTGGTGTACTG
GTGTCCCAATCAACCCGTATATGGCAAGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis