Browse Element(s) Details


Os.48089.1.S1_at

Description gb:AK102860.1
DB_XREF= gi:32988069
TID=Os.48089.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111F18, full insert sequence.
FL= gb:AK102860.1 gb:AK101302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5180011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein
LOC_Os04g51810OsAffx.4151.1.S1_at11/114+30496303..30498019hypothetical protein
LOC_Os04g51820Os.50175.2.S1_at11/114+30505610..30507895Cation transport protein, expressed
LOC_Os04g51830Os.50365.1.S1_at11/114+30515100..30520251Cation transport protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48089.1.S1_at--425--7872Chr04:30487827..30487851 (25 bp)
GGTTTGACCTCGCTTTGAGCTTAGG
LOC_Os04g51800
Os.48089.1.S1_at--433--6051Chr04:30487912..30487936 (25 bp)
GAGATTCCTGAATACCTGTTGATAG
LOC_Os04g51800
Os.48089.1.S1_at--691--6651Chr04:30487974..30487998 (25 bp)
GTTGATCCCAGATTATTCACATGTT
LOC_Os04g51800
Os.48089.1.S1_at--655--6831Chr04:30487996..30488020 (25 bp)
GTTTCATATACAGCACAAGTTCGTT
LOC_Os04g51800
Os.48089.1.S1_at--146--6511Chr04:30488055..30488079 (25 bp)
GATATATGAGCCATCTTTCAGTTAT
LOC_Os04g51800
Os.48089.1.S1_at--955--3171Chr04:30488088..30488112 (25 bp)
AATTGGATGCCAACATTGCGTCAAA
LOC_Os04g51800
Os.48089.1.S1_at--666--3751Chr04:30488164..30488188 (25 bp)
CTCAGTTTTCCTTCAACAGGCATGC
LOC_Os04g51800
Os.48089.1.S1_at--911--7991Chr04:30488262..30488286 (25 bp)
GGATGGAATCTTATATGGTCAACTT
LOC_Os04g51800
Os.48089.1.S1_at--1039--7891Chr04:30488298..30488322 (25 bp)
GGTTCCTTTGTTTTGAGGCATCTGC
LOC_Os04g51800
Os.48089.1.S1_at--148--131Chr04:30488336..30488360 (25 bp)
ATTCATGCTTTATGCCTTTGTTTTC
LOC_Os04g51800
Os.48089.1.S1_at--382--10311Chr04:30488369..30488393 (25 bp)
TTTCTGGAGAGACACAATGGCTATT
LOC_Os04g51800
Target Sequence 
GGTTTGACCTCGCTTTGAGCTTAGGTTCCTTTTTTCTTCTTAGTGGAGAAAATCCTAATTTCTCTTATGTATTCTTTCTT
GCATTGAGATTCCTGAATACCTGTTGATAGTTTTATTTATAGTTGGCAAATTTGACTGAANCATCCAGTTGATCCCAGAT
TATTCACATGTTTCATATACAGCACAAGTTCGTTCCATATTGAGAAAGGTTTGCAAGACTGTGAACTAGATATATGAGCC
ATCTTTCAGTTATTATTATTAAATTGGATGCCAACATTGCGTCAAAAAAAAAAAAAATGGATGCCAACAGAATATGAGGA
ACTGGAAGGCACCAGCCCTCAGTTTTCCTTCAACAGGCATGCAAGGTACAGAACCTGAGGTGGAGAATGAAATTTCAGGA
TTCAAACTCCAGGAATTTAATGATGAATTTTAGGTGGATGGAATCTTATATGGTCAACTTTGTAAAAGAAAGGTTCCTTT
GTTTTGAGGCATCTGCTTAAGATGTTTAAATTCATGCTTTATGCCTTTGTTTTCTTTTCCTTTTTCTGGAGAGACACAAT
GGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis