Browse Element(s) Details


Os.8921.1.S1_at

Description gb:AK059884.1
DB_XREF= gi:32969902
TID=Os.8921.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-A09, full insert sequence.
FL= gb:AK104482.1 gb:AK059884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5179211/11PAP_fibrillin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51750NANA4+30447322..30451287retrotransposon protein, putative, unclassified
LOC_Os04g51760OsAffx.19599.1.S1_x_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760OsAffx.19599.1.S1_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760Os.53659.1.S1_at1/114+30452765..30454807hypothetical protein
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8921.1.S1_at--893--1711Chr04:30469439..30469463 (25 bp)
ACCAGAAGTGAAGGTAGGCTCCCTG
LOC_Os04g51792
Os.8921.1.S1_at--112--2691Chr04:30469384..30469408 (25 bp)
AAGCTGGAGATCACCTATGTCGACG
LOC_Os04g51792
Os.8921.1.S1_at--1110--10111Chr04:30469369..30469393 (25 bp)
TATGTCGACGAGAAGATCAGGCTGG
LOC_Os04g51792
Os.8921.1.S1_at--839--911Chr04:30469331..30469355 (25 bp)
AGGCTCGCTCTTCGTCTTCATGAGA
LOC_Os04g51792
Os.8921.1.S1_at--713--8251Chr04:30469294..30469318 (25 bp)
GGCAGCAGGCAATGTTTGTACCATC
LOC_Os04g51792
Os.8921.1.S1_at--890--6971Chr04:30469277..30469301 (25 bp)
GTACCATCATGTCCTTTGAGACCAC
LOC_Os04g51792
Os.8921.1.S1_at--674--7691Chr04:30469248..30469272 (25 bp)
GGGTAGCACCATAGCACTGATGCTA
LOC_Os04g51792
Os.8921.1.S1_at--958--5091Chr04:30469235..30469259 (25 bp)
GCACTGATGCTACGACAATATGTTT
LOC_Os04g51792
Os.8921.1.S1_at--183--3151Chr04:30469182..30469206 (25 bp)
AATTCAGAGGTCATGTTGGCTAGTA
LOC_Os04g51792
Os.8921.1.S1_at--758--8491Chr04:30469166..30469190 (25 bp)
TGGCTAGTAGTGTTCTTCAGACCTC
LOC_Os04g51792
Os.8921.1.S1_at--1060--7411Chr04:30469157..30469181 (25 bp)
GTGTTCTTCAGACCTCCGAATTAGA
LOC_Os04g51792
Target Sequence 
ACCAGAAGTGAAGGTAGGCTCCCTGGGGTTTCAGTATGGTGGCGAGAGCGAAGTTAAGCTGGAGATCACCTATGTCGACG
AGAAGATCAGGCTGGGAAAAGGATCAAGAGGCTCGCTCTTCGTCTTCATGAGACGATGATATGAGGGCAGCAGGCAATGT
TTGTACCATCATGTCCTTTGAGACCACAAGAGGGTAGCACCATAGCACTGATGCTACGACAATATGTTTGTGTGTACAAT
ACTGTATTCTGTTGTAAAATTCAGAGGTCATGTTGGCTAGTAGTGTTCTTCAGACCTCCGAATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis