Browse Element(s) Details


Os.32540.1.S1_at

Description gb:AK103790.1
DB_XREF= gi:32988999
TID=Os.32540.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145L05, full insert sequence.
FL= gb:AK103790.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5177011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51730NANA4+30434108..30436108retrotransposon protein, putative, unclassified
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51750NANA4+30447322..30451287retrotransposon protein, putative, unclassified
LOC_Os04g51760OsAffx.19599.1.S1_x_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760OsAffx.19599.1.S1_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760Os.53659.1.S1_at1/114+30452765..30454807hypothetical protein
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32540.1.S1_at--614--7231Chr04:30460293..30460317 (25 bp)
GTCGCTTCAGAAGATGATGTGCCCA
LOC_Os04g51770
Os.32540.1.S1_at--1064--771Chr04:30460277..30460301 (25 bp)
ATGTGCCCAGTGCTGTTACTACTAT
LOC_Os04g51770
Os.32540.1.S1_at--920--2111Chr04:30460239..30460263 (25 bp)
ACATGGATCCGTGTATTCCTGCAAC
LOC_Os04g51770
Os.32540.1.S1_at--562--2471Chr04:30460217..30460241 (25 bp)
AACACAGTGCCTTGCGCTATGGTCT
LOC_Os04g51770
Os.32540.1.S1_at--178--10311Chr04:30460189..30460213 (25 bp)
TTTCTGAGAGCTTGTACTTGTACCT
LOC_Os04g51770
Os.32540.1.S1_at--810--7431Chr04:30460154..30460178 (25 bp)
GTGTATGCATCAAGCTGCTGCTACT
LOC_Os04g51770
Os.32540.1.S1_at--1088--7571Chr04:30460093..30460117 (25 bp)
GGGCTGAATGCCTGTACCCCATGAG
LOC_Os04g51770
Os.32540.1.S1_at--957--1491Chr04:30460070..30460094 (25 bp)
AGCACAGGATGCTCTCGATCATTGA
LOC_Os04g51770
Os.32540.1.S1_at--969--7471Chr04:30460029..30460053 (25 bp)
GTGGGCCTCCAACTAAAACTGTAAT
LOC_Os04g51770
Os.32540.1.S1_at--711--10391Chr04:30459964..30459988 (25 bp)
TTTTGTCTTGTTCTTCGGCTGATAA
LOC_Os04g51770
Os.32540.1.S1_at--196--10551Chr04:30459933..30459957 (25 bp)
TTCTTCTGATAACAATTGCCCCTGG
LOC_Os04g51770
Target Sequence 
GTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACA
CAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGC
TACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCG
ATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTG
AACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis