Browse Element(s) Details


OsAffx.4150.1.S1_x_at

Description tigr:9632.m05008
TID=OsAffx.4150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5178611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51750NANA4+30447322..30451287retrotransposon protein, putative, unclassified
LOC_Os04g51760OsAffx.19599.1.S1_x_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760OsAffx.19599.1.S1_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760Os.53659.1.S1_at1/114+30452765..30454807hypothetical protein
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4150.1.S1_x_at--1154--1591Chr04:30468437..30468694 (25 bp)
AGCTGCCGCTGTGGGACAAGAGATC
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--46--6371Chr04:30468416..30468440 (25 bp)
GATCCAAGTACTCGGCACAATCAGT
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--863--3191Chr04:30467973..30467997 (25 bp)
CAATGCCTATGCGTGTGCTAACAGT
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--457--5971Chr04:30467899..30467923 (25 bp)
GAGAAGCTTGGTTACTACTGTGATA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--224--5631Chr04:30467869..30467893 (25 bp)
GACACACTTATCAAATCCAACCCAA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--15--3011Chr04:30467566..30467590 (25 bp)
AATGATGCTGCAGCTCAAGCCTGAA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--45--2771Chr04:30467441..30467567 (25 bp)
AAGACTTCGTGGTTGTGCTGGATGA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--551--5311Chr04:30467410..30467434 (25 bp)
GAAGGATGTCACGTCTGAGCAGGTA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--871--7691Chr04:30467238..30467262 (25 bp)
GGGTCGTCAAGGCTCACATTTTGTA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--349--8531Chr04:30467209..30467233 (25 bp)
TGGACCGTATGGTTTTGGGCTACAA
LOC_Os04g51786
OsAffx.4150.1.S1_x_at--3--851Chr04:30466864..30467133 (25 bp)
ATGGAGCAGCTCTACAGGGCATGGA
LOC_Os04g51786
Target Sequence 
AGCTGCCGCTGTGGGACAAGAGATCCAAGTACTCGGCACAATCAGTGAGAGCAATGCCTATGCGTGTGCTAACAGTTGGA
AAGAAGAGGTCTCGAGGGGCACAGCTCATTGTTGAAGAATACAAGGAGAAGCTTGGTTACTACTGTGATATTGAGGACAC
ACTTATCAAATCCAACCCAAAACTCACAAGTGATGTTAAGGTGCAAGTGGAGGCAGAAGACATGGCAATGATGCTGCAGC
TCAAGCCTGAAGACTTCGTGGTTGTGCTGGATGAAAACGGGAAGGATGTCACGTCTGAGCAGGTAGCTGATCTGGTCGGG
GATGCTGGGAACACGGGGTCGTCAAGGCTCACATTTTGTATTGGTGGACCGTATGGTTTTGGGCTACAAGTGCGAGAGCG
TGCAGATGCAACAATTAGACTATCCTCAATGGTTTTGAATCATCAAGTTGCCTTGATAGTTCTAATGGAGCAGCTCTACA
GGGCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4150.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis