Browse Element(s) Details


Os.50181.1.S1_at

Description gb:AK119999.1
DB_XREF= gi:37989622
TID=Os.50181.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-H05, full insert sequence.
FL= gb:AK119999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3173010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31670OsAffx.14074.1.S1_at11/114+18788451..18789343hypothetical protein
LOC_Os04g31670Os.52101.1.S1_at10/114+18788451..18789343hypothetical protein
LOC_Os04g31680OsAffx.14075.1.S1_at11/114+18790715..18792054hypothetical protein
LOC_Os04g31690Os.11184.1.S1_at11/114+18797458..18800398expressed protein
LOC_Os04g31700Os.8672.1.S1_at11/114+18800365..18805535methylisocitrate lyase 2, putative, expressed
LOC_Os04g31710OsAffx.3968.1.S1_at11/114+18807125..18808116expressed protein
LOC_Os04g31720OsAffx.26275.1.S1_at11/114+18808476..18809186hypothetical protein
LOC_Os04g31730Os.50181.1.S1_at10/114+18810476..18811405expressed protein
LOC_Os04g31740OsAffx.3969.1.S1_at10/114+18813961..18814651hypothetical protein
LOC_Os04g31750OsAffx.14076.1.S1_at11/114+18816251..18817073hypothetical protein
LOC_Os04g31760OsAffx.3970.1.S1_at11/114+18817513..18818170expressed protein
LOC_Os04g31769NANA4+18820811..18820981NA
LOC_Os04g31780OsAffx.14077.1.S1_x_at11/114+18827190..18827928hypothetical protein
LOC_Os04g31790Os.49826.1.S1_at11/114+18833215..18850327expressed protein
LOC_Os04g31790OsAffx.21285.1.S1_at1/114+18833215..18850327expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50181.1.S1_at--231--9431Chr04:18811107..18811131 (25 bp)
TCGGGAAGCCCTACTTCACCTGCAT
LOC_Os04g31730
Os.50181.1.S1_at--713--2051Chr04:18811095..18811119 (25 bp)
ACTTCACCTGCATCATGTGCAAGTC
LOC_Os04g31730
Os.50181.1.S1_at--500--412Chr04:18811084..18811108 (25 bp)
ATCATGTGCAAGTCCCATGTCCAGC
LOC_Os04g31730
Os.50181.1.S1_at--880--51Chr04:18810936..18811079 (25 bp)
ATTCCAAGTGGTGGTCCCGAGGTCG
LOC_Os04g31730
Os.50181.1.S1_at--238--9271NONE
TCCTCCGAGCGGAGATCCCGGCGAG
NONE
Os.50181.1.S1_at--91--4031Chr04:18810624..18810648 (25 bp)
CGTCATAGACTAGGGCGATGGTGCT
LOC_Os04g31730
Os.50181.1.S1_at--561--9111Chr04:18810594..18810618 (25 bp)
TGCTGCCATTGTTCATCGCCATCGA
LOC_Os04g31730
Os.50181.1.S1_at--999--511Chr04:18810574..18810598 (25 bp)
ATCGATGCCATCTCGAGCAGCTCGT
LOC_Os04g31730
Os.50181.1.S1_at--376--4071Chr04:18810561..18810585 (25 bp)
CGAGCAGCTCGTTTTGAACTGAAAT
LOC_Os04g31730
Os.50181.1.S1_at--49--8031Chr04:18810533..18810557 (25 bp)
GGAGGTTTCAGTTTCAGGTAATGCA
LOC_Os04g31730
Os.50181.1.S1_at--415--7831Chr04:18810517..18810541 (25 bp)
GGTAATGCAGCTGTGGAAACAATTT
LOC_Os04g31730
Target Sequence 
TCGGGAAGCCCTACTTCACCTGCATCATGTGCAAGTCCCATGTCCAGCCGCCATTCCAAGTGGTGGTCCCGAGGTCGTTC
GCGCCGCTGCTGCCGTCGAGGACGACGCCGGCGACGCTGTCGTGGCGGGGGCGGTCGTGGGGGATGCGGTTCACCGGCGG
GCGGCTGATCCAGCGGCTGGAGGCCGGGTGGCGCGGCTTCGCCGTGGACAACGACCTCAGGCTCGGCGACGGGTGCGTGT
TCGAGCTCCTCGTCGGCGGCGGCGGCGAGCAGGAGCGCGTCGAGTTCAGGGTGCAGGTCCTCCGAGCGGAGATCCCGGCG
AGGATCCGGGGCCGCGCCGGCGGCTACACCTCGGCCACCCCCATCGTCATAGACTAGGGCGATGGTGCTGCTGCTGCTGC
CATTGTTCATCGCCATCGATGCCATCTCGAGCAGCTCGTTTTGAACTGAAATTTGGGAGGTTTCAGTTTCAGGTAATGCA
GCTGTGGAAACAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis