Browse Element(s) Details

Os.50189.1.S1_at

Description

gb:AK105443.1
DB_XREF= gi:32990652
TID=Os.50189.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-A08, full insert sequence.
FL= gb:AK121959.1 gb:AK105443.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46910	11/11	zinc finger family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46860	OsAffx.28141.1.S1_at	10/11	6	+	28439984..28443176	hypothetical protein
LOC_Os06g46860	OsAffx.988.1.S1_at	1/11	6	+	28439984..28443176	hypothetical protein
LOC_Os06g46870	OsAffx.15958.1.S1_at	11/11	6	+	28447781..28448967	Protease inhibitor/seed storage/LTP family protein
LOC_Os06g46880	OsAffx.15959.1.S1_s_at	11/11	6	+	28451973..28455564	Surp module family protein, expressed
LOC_Os06g46890	Os.14747.1.S1_at	11/11	6	+	28456955..28462486	expressed protein
LOC_Os06g46900	Os.11106.1.S1_at	11/11	6	+	28462800..28465239	phosphosulfolactate synthase-related protein, putative, expressed
LOC_Os06g46910	Os.50189.1.S1_at	11/11	6	+	28466986..28470156	zinc finger family protein, putative, expressed
LOC_Os06g46910	Os.50189.2.S1_at	11/11	6	+	28466986..28470156	zinc finger family protein, putative, expressed
LOC_Os06g46920	Os.52555.1.S1_at	11/11	6	+	28469176..28471150	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g46930	Os.7589.1.S1_at	11/11	6	+	28471589..28473781	50S ribosomal protein L24, chloroplast precursor, putative, expressed
LOC_Os06g46940	Os.49601.1.S1_at	9/11	6	+	28476209..28479889	Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950	Os.7902.1.S1_at	11/11	6	+	28482814..28483492	EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960	NA	NA	6	+	28486836..28487644	RNase H domain-containing protein, putative
LOC_Os06g46970	Os.4940.1.S1_at	11/11	6	+	28489033..28489686	expressed protein
LOC_Os06g46980	Os.56964.1.S1_at	11/11	6	+	28492189..28492849	expressed protein
LOC_Os06g46990	Os.51830.1.S1_at	11/11	6	+	28494282..28496333	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0031225	cellular_component	anchored to membrane
GO:0003676	molecular_function	nucleic acid binding
GO:0003700	molecular_function	transcription factor activity
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50189.1.S1_at--496--641	1	Chr06:28468882..28468906 (25 bp)	GATCTGATCCCAGGTATTGTTCTGT	LOC_Os06g46910
Os.50189.1.S1_at--25--639	1	Chr06:28468887..28468911 (25 bp)	GATCCCAGGTATTGTTCTGTTCTGT	LOC_Os06g46910
Os.50189.1.S1_at--112--1061	1	Chr06:28468901..28468925 (25 bp)	TTCTGTTCTGTTAGATGCTGGCGAT	LOC_Os06g46910
Os.50189.1.S1_at--798--61	1	Chr06:28468915..28468939 (25 bp)	ATGCTGGCGATTTGTTAGTATGTAC	LOC_Os06g46910
Os.50189.1.S1_at--825--1005	1	Chr06:28468930..28468954 (25 bp)	TAGTATGTACATTTTGCTGTTGTTT	LOC_Os06g46910
Os.50189.1.S1_at--457--273	1	Chr06:28468971..28468995 (25 bp)	AAGCACATGATTTTAGCAGTTTTTT	LOC_Os06g46910
Os.50189.1.S1_at--162--21	1	Chr06:28469003..28469027 (25 bp)	ATTTGCAAATGCGTGTGTTTATCAG	LOC_Os06g46910
Os.50189.1.S1_at--1134--877	1	Chr06:28469018..28469042 (25 bp)	TGTTTATCAGTGGATGTTTGCATGA	LOC_Os06g46910
Os.50189.1.S1_at--56--353	1	Chr06:28469038..28469062 (25 bp)	CATGATGTTGTGGTGCTTAGGAATA	LOC_Os06g46910
Os.50189.1.S1_at--883--749	1	Chr06:28469047..28469071 (25 bp)	GTGGTGCTTAGGAATATGGCATCAA	LOC_Os06g46910
Os.50189.1.S1_at--145--1011	1	Chr06:28469061..28469085 (25 bp)	TATGGCATCAATTCGAGATAGTGGT	LOC_Os06g46910

Target Sequence

GATCTGATCCCAGGTATTGTTCTGTTCTGTTAGATGCTGGCGATTTGTTAGTATGTACATTTTGCTGTTGTTTCTTCTTC
AGAAAAAAAAAGCACATGATTTTAGCAGTTTTTTTTTTTTTAGATTTGCAAATGCGTGTGTTTATCAGTGGATGTTTGCA
TGATGTTGTGGTGCTTAGGAATATGGCATCAATTCGAGATAGTGGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis