Browse Element(s) Details


Os.50201.1.S1_at

Description gb:AK120071.1
DB_XREF= gi:37989694
TID=Os.50201.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013005I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005I06, full insert sequence.
FL= gb:AK120071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3305011/11forkhead-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33030Os.12183.1.S1_at11/114+19807021..19808797expressed protein
LOC_Os04g33040Os.7294.1.S1_at11/114+19818732..19822160Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50201.1.S1_at--802--10211Chr04:19827541..19827565 (25 bp)
TATTCCACCATCTGCCATGTCAAAG
LOC_Os04g33050
Os.50201.1.S1_at--194--2691Chr04:19827635..19827659 (25 bp)
AAGCTGGGCGATAGGCCTGCGACAT
LOC_Os04g33050
Os.50201.1.S1_at--602--3831Chr04:19827651..19827675 (25 bp)
CTGCGACATCGTTAGCCATGCGAGA
LOC_Os04g33050
Os.50201.1.S1_at--1059--8711Chr04:19827783..19827807 (25 bp)
TGTCTGATTGCTCCCCTGAAGAGAA
LOC_Os04g33050
Os.50201.1.S1_at--762--5711Chr04:19827851..19827875 (25 bp)
GACTCTTCACAAAGACCAGGCTGGC
LOC_Os04g33050
Os.50201.1.S1_at--509--3491Chr04:19827867..19827891 (25 bp)
CAGGCTGGCCAGTGAAGTTGAAGTC
LOC_Os04g33050
Os.50201.1.S1_at--263--2831Chr04:19827909..19827933 (25 bp)
AAGTTCCTGTCATCGCATCTGATTT
LOC_Os04g33050
Os.50201.1.S1_at--809--9471Chr04:19827926..19827950 (25 bp)
TCTGATTTCAAGTGCAGGCAGCCGC
LOC_Os04g33050
Os.50201.1.S1_at--733--931Chr04:19827941..19827965 (25 bp)
AGGCAGCCGCACGAGATCTGACGAT
LOC_Os04g33050
Os.50201.1.S1_at--1156--6391Chr04:19827955..19827979 (25 bp)
GATCTGACGATTCTTTCTTACTGAA
LOC_Os04g33050
Os.50201.1.S1_at--108--4951Chr04:19828033..19828057 (25 bp)
GCATTCGTTGTCAATCTTTCTTGTA
LOC_Os04g33050
Target Sequence 
TATTCCACCATCTGCCATGTCAAAGCAGATCAGTGGAAGGAGGCACGAGATCAATGACATTGTCCTGCCATTCGTCGTCC
CTCCACCGCAATATAAGCTGGGCGATAGGCCTGCGACATCGTTAGCCATGCGAGAGGCCATGGCTGAAGCTAGAATTCTG
CAGAGTAACGATTTAGTACTGGACTTGTCACAGGATACAGACGAGGATATACCTGATGAAGATGATGAGCATGTGATTGA
GCTGTCTGATTGCTCCCCTGAAGAGAAGGAAGAGGAGAAGATCTACGCAGAGACGCTGTGGGAGCAAGTAGACTCTTCAC
AAAGACCAGGCTGGCCAGTGAAGTTGAAGTCCAGATGTTTCGGATGACAAGTTCCTGTCATCGCATCTGATTTCAAGTGC
AGGCAGCCGCACGAGATCTGACGATTCTTTCTTACTGAAGATATTTGATTCGATTGTGATTTGTTAGAATTGTATTTTAC
AATGTGTAGTATGCATTCGTTGTCAATCTTTCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis