Browse Element(s) Details


Os.50210.1.S1_at

Description gb:AK120116.1
DB_XREF= gi:37989739
TID=Os.50210.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025M20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025M20, full insert sequence.
FL= gb:AK120116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2328011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23230OsAffx.828.1.S1_x_at1/118+13893507..13894100retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23240OsAffx.22927.2.S1_x_at1/118+13897982..13900529retrotransposon protein, putative, unclassified
LOC_Os08g23250OsAffx.21171.4.S1_at2/118+13903147..13905158retrotransposon protein, putative, unclassified
LOC_Os08g23260NANA8+13906199..13908083retrotransposon protein, putative, unclassified
LOC_Os08g23270OsAffx.29313.1.S1_at11/118+13911249..13912835hypothetical protein
LOC_Os08g23280Os.50210.1.S1_at11/118+13915390..13918510expressed protein
LOC_Os08g23290OsAffx.17113.1.S1_at11/118+13923227..13925568Leucine Rich Repeat family protein
LOC_Os08g23300NANA8+13932644..13935880transposon protein, putative, unclassified
LOC_Os08g23310NANA8+13936497..13942649transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50210.1.S1_at--1074--5071Chr08:13917916..13917940 (25 bp)
GCACCAAGTTCATTTCAGCTCAAAC
LOC_Os08g23280
Os.50210.1.S1_at--217--6831Chr08:13917953..13917977 (25 bp)
GTTTACTGGGCAAACATTCTCTTAG
LOC_Os08g23280
Os.50210.1.S1_at--111--8291Chr08:13917985..13918009 (25 bp)
GGCATAGGTTCTGTTCCTACTGACA
LOC_Os08g23280
Os.50210.1.S1_at--405--5451Chr08:13918013..13918037 (25 bp)
GAACCCATTTACAAGTGCTGCTGCA
LOC_Os08g23280
Os.50210.1.S1_at--604--5992Chr10:14310607..14310997 (25 bp)
GAGACCAGAGCTCAAGTGCTGAAAC
NONE
Os.50210.1.S1_at--1118--7291Chr08:13918087..13918111 (25 bp)
GTGCTGAAACTGACAAGGCCTTGGA
LOC_Os08g23280
Os.50210.1.S1_at--273--8431Chr08:13918103..13918127 (25 bp)
GGCCTTGGAATCTTGGAATTCTTCT
LOC_Os08g23280
Os.50210.1.S1_at--973--2231Chr08:13918133..13918157 (25 bp)
ACAATTCCTTGATGGCTATCTACAG
LOC_Os08g23280
Os.50210.1.S1_at--975--10151Chr08:13918217..13918241 (25 bp)
TATCTGGTAGGCTGCATGGGCTGCT
LOC_Os08g23280
Os.50210.1.S1_at--430--4933Chr08:13918252..13918276 (25 bp)
GCTTGGCCTAGCTCACATACTGAAG
LOC_Os08g23280
Os.50210.1.S1_at--877--6873Chr08:13918294..13918318 (25 bp)
GTATAAATACCAACCGTGGCAGTGA
LOC_Os08g23280
Target Sequence 
GCACCAAGTTCATTTCAGCTCAAACTTACAGCAAGTTGTTTACTGGGCAAACATTCTCTTAGAAGGAAAGGCATAGGTTC
TGTTCCTACTGACAAAAGAACCCATTTACAAGTGCTGCTGCATCAACTTATGTACAAGAAATCATATCAAATGTATGAGA
CCAGAGCTCAAGTGCTGAAACTGACAAGGCCTTGGAATCTTGGAATTCTTCTTCTCAACAATTCCTTGATGGCTATCTAC
AGCAGAAGTTGTTGCATCGACTTGGGGACAAGTCGATTTTTAAGGAGGGAGGAATGTCATGTATCTGGTAGGCTGCATGG
GCTGCTGGAGAAATGGGCTTGGCCTAGCTCACATACTGAAGGTGCAAGCAACCAAGAAGTATAAATACCAACCGTGGCAG
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis