Browse Element(s) Details


Os.50235.1.S1_a_at

Description gb:AK072368.1
DB_XREF= gi:32982391
TID=Os.50235.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072G22, full insert sequence.
FL= gb:AK120266.1 gb:AK072368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1077011/11DEAD/DEAH box helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed
LOC_Os02g10750OsAffx.28048.1.S1_at10/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_x_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed
LOC_Os02g10780Os.15304.1.A1_at11/112+5706636..5709119ids4, putative, expressed
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50235.1.S1_a_at--1022--7851Chr02:5695153..5695177 (25 bp)
GGTATGGCTATTGTCTTTGTTAATG
LOC_Os02g10770
Os.50235.1.S1_a_at--435--5252Chr11:21391058..21391552 (25 bp)
GAATCTTTTCAGAGAGCTTGTTCAG
NONE
Os.50235.1.S1_a_at--603--9051Chr02:5695082..5695106 (25 bp)
TGCAGGTGCTCCAATTCCCAGGGAA
LOC_Os02g10770
Os.50235.1.S1_a_at--562--8891Chr02:5695042..5695066 (25 bp)
TACACAACCGGTATACCCCTTGGTG
LOC_Os02g10770
Os.50235.1.S1_a_at--247--7751Chr02:5694990..5695014 (25 bp)
GGTGACATTCTTGACCAGGGTAAAT
LOC_Os02g10770
Os.50235.1.S1_a_at--485--6131Chr02:5694961..5694985 (25 bp)
GAGTGGCGGTCAATCTTTCTTAAGG
LOC_Os02g10770
Os.50235.1.S1_a_at--1139--6891Chr02:5694925..5694949 (25 bp)
GTATGCCTACCTGGAATGTTAGCTA
LOC_Os02g10770
Os.50235.1.S1_a_at--300--3011Chr02:5694876..5694900 (25 bp)
AATGCATCTTATCATCTCTGGTGGA
LOC_Os02g10770
Os.50235.1.S1_a_at--681--3611Chr02:5694825..5694849 (25 bp)
CTTGTCAAATTTCCAGGCTTTTCCT
LOC_Os02g10770
Os.50235.1.S1_a_at--535--4371Chr02:5694797..5694821 (25 bp)
CCAACACGATTTCTCAGGGCAAGTA
LOC_Os02g10770
Os.50235.1.S1_a_at--776--7111Chr02:5694766..5694790 (25 bp)
GTCATGAAATCAGCGTACGTGGCAA
LOC_Os02g10770
Target Sequence 
GGTATGGCTATTGTCTTTGTTAATGAGGAGGACAGGAATCTTTTCAGAGAGCTTGTTCAGATTCTGAAGACTGCAGGTGC
TCCAATTCCCAGGGAACTTGCAAATTCAAAATACACAACCGGTATACCCCTTGGTGGTGGTAAGAAGAGAAAGCTGAAGT
CTAGGTGACATTCTTGACCAGGGTAAATATCAGAGTGGCGGTCAATCTTTCTTAAGGATGGAAAAATTGTATGCCTACCT
GGAATGTTAGCTATGTTTTTATCTTCATGGGAATGCAAATGCATCTTATCATCTCTGGTGGATAAGTTGGATATGTCTAG
AATTCAATCTTGTCAAATTTCCAGGCTTTTCCTGAGCCAACACGATTTCTCAGGGCAAGTACATGAAGTCATGAAATCAG
CGTACGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50235.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis