Browse Element(s) Details


Os.50260.2.A1_x_at

Description gb:AK121162.1
DB_XREF= gi:37990785
TID=Os.50260.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080G13, full insert sequence.
FL= gb:AK121162.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g068801/11Serine/threonine protein phosphatase PP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06850Os.54240.1.S1_at2/116+3234340..3238083NB-ARC domain containing protein
LOC_Os06g06860Os.54240.1.S1_at11/116+3240834..3245313NB-ARC domain containing protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein
LOC_Os06g06900OsAffx.27480.1.S1_at11/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900Os.23257.1.A1_at1/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50260.2.A1_x_at--620--6911Chr06:22992724..22992748 (25 bp)
GTATGACAACATAACTTCCTCCAAA
NONE
Os.50260.2.A1_x_at--394--4551Chr06:22992671..22992695 (25 bp)
GCCCAGTAAGGCTATTATTGCGCAA
NONE
Os.50260.2.A1_x_at--744--7271Chr06:22992608..22992632 (25 bp)
GTGGGATTGGGCCTTTGAACCTATT
NONE
Os.50260.2.A1_x_at--967--6853Chr06:22992538..22992562 (25 bp)
GTTTGATGGTAATTCCCCTGTGAGT
NONE
Os.50260.2.A1_x_at--180--9311Chr06:22992525..22992549 (25 bp)
TCCCCTGTGAGTGAGTTATTTGCCA
NONE
Os.50260.2.A1_x_at--725--10671Chr06:22992506..22992530 (25 bp)
TTGCCATGGCTAGACTTTTCAGGGA
NONE
Os.50260.2.A1_x_at--259--871Chr06:22992403..22992427 (25 bp)
ATGGCCTAAACTATCTGGTATGCTA
NONE
Os.50260.2.A1_x_at--1110--3151Chr06:22992371..22992395 (25 bp)
AATTGTTCCGTGTGAGACTTAGATC
NONE
Os.50260.2.A1_x_at--442--10232Chr06:22992313..22992337 (25 bp)
TATTGTTCCTGATAGTTTGTTACCC
NONE
Os.50260.2.A1_x_at--389--3291Chr06:22992181..22992205 (25 bp)
CAAAGGCTTTGGGATTTCTCCAGTA
NONE
Os.50260.2.A1_x_at--441--10311Chr06:22992167..22992191 (25 bp)
TTTCTCCAGTAAGGGTATTTCTCGT
NONE
Target Sequence 
GTATGACAACATAACTTCCTCCAAATTTAGCAATGATCCAAAGAAAGGAATGAGCCCAGTAAGGCTATTATTGCGCAAGT
ACAGCGTTTTCAGATTGGAAGCATTGACAAGAGTAGGTGGGATTGGGCCTTTGAACCTATTATTGGACAGAATTAATGTT
TTAATATTTGGGAGTGTATAACCTAAGTTTGATGGTAATTCCCCTGTGAGTGAGTTATTTGCCATGGCTAGACTTTTCAG
GGATGACAAGTTGAAGATGGATGATGGAACATGCCCAGTTAATTTGTTTACATTCAAATTCAACAGTTCTAGTGTTGGAA
TATGGCCTAAACTATCTGGTATGCTACCGGTTAAATTGTTCCGTGTGAGACTTAGATCAAGTAGGGAGGAAAGATTTCCT
AATGAGGAAGGTATTGTTCCTGATAGTTTGTTACCCCCTAAATATAGATACTGTAAAGGGAGAGGGGTGGCAGTAACATG
TGGTATAGAACCAACAAAGTTATTCTCATCAAGGTAAATATCAGTAAGAGTTGAGGAGGTGAACAAAGGCTTTGGGATTT
CTCCAGTAAGGGTATTTCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50260.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis