Browse Element(s) Details


Os.50274.1.S2_at

Description gb:AK120483.1
DB_XREF= gi:37990106
TID=Os.50274.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112K02, full insert sequence.
FL= gb:AK120483.1 gb:AK120906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50274.1.S2_at--531--7911Chr03:15946346..15946370 (25 bp)
GGTTGTATCACCTGGAAACGCAAAT
LOC_Os03g27830
Os.50274.1.S2_at--127--1011Chr03:15946316..15946340 (25 bp)
AGGATATTACAGTGGCAGCTCATCA
LOC_Os03g27830
Os.50274.1.S2_at--873--3391Chr03:15946301..15946325 (25 bp)
CAGCTCATCAGATTGCGACATTGGA
LOC_Os03g27830
Os.50274.1.S2_at--75--6491Chr03:15946264..15946288 (25 bp)
GATACTGCTTCACCCTCGTGGAAAG
LOC_Os03g27830
Os.50274.1.S2_at--310--2671Chr03:15946242..15946266 (25 bp)
AAGCCCAGGCACTGAGAACTTGGTC
LOC_Os03g27830
Os.50274.1.S2_at--538--1431Chr03:15946228..15946252 (25 bp)
AGAACTTGGTCCGTGTGAGGTTTAG
LOC_Os03g27830
Os.50274.1.S2_at--712--291Chr03:15946166..15946190 (25 bp)
ATAGCAGCTTGCTTCAGGGTAAATG
LOC_Os03g27830
Os.50274.1.S2_at--86--6931Chr03:15945851..15945875 (25 bp)
GTATGTAACTTGTTCGACAGTCGAC
LOC_Os03g27830
Os.50274.1.S2_at--307--1151Chr03:15945833..15945857 (25 bp)
AGTCGACACAACTTGGTAAGCTCTG
LOC_Os03g27830
Os.50274.1.S2_at--841--9791Chr03:15945817..15945841 (25 bp)
TAAGCTCTGGTGAAAGGCAACGCAT
LOC_Os03g27830
Os.50274.1.S2_at--806--2591Chr03:15945799..15945823 (25 bp)
AACGCATTGATTTGCTATATCCAAC
LOC_Os03g27830
Target Sequence 
GGTTGTATCACCTGGAAACGCAAATTTGGAAGGATATTACAGTGGCAGCTCATCAGATTGCGACATTGGATTACTGAAGG
CAGATACTGCTTCACCCTCGTGGAAAGCCCAGGCACTGAGAACTTGGTCCGTGTGAGGTTTAGGATTGAGTAGATAGCTG
CACAAATTTGTAGAAAAAAAATAGCAGCTTGCTTCAGGGTAAATGCAGTAGAGTCTTTTGTGTAGAAATTAAAAATTACT
CCCTCCGTTTCAGGTTGTAAGACGTTTTGACTTCGGTCAAAAATTTGACTAAATTTATAGAAAAAATTAAAAACATTTTC
AACTCAAGACAAATTTATTATAAAAATATATTCAATTTTGATTTGATGAAACTATTTAGTATTATAAATATTACTATATT
TGTCTATAAACTTAGTCAAACTTAAAATAATTATTTGACTTTGACTAAAATCAAAATGTCTTATAACCTAAAACTTATAA
TCTGAAACGGAGAGAGTATGTAACTTGTTCGACAGTCGACACAACTTGGTAAGCTCTGGTGAAAGGCAACGCATTGATTT
GCTATATCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50274.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis