Browse Element(s) Details


Os.19566.1.S1_at

Description gb:AK063311.1
DB_XREF= gi:32973329
TID=Os.19566.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G03, full insert sequence.
FL= gb:AK063311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2782011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19566.1.S1_at--797--4531Chr03:15944930..15944954 (25 bp)
GCCCCATCTGGTTAGAAGCACAAAT
LOC_Os03g27820
Os.19566.1.S1_at--241--2291Chr03:15944951..15944975 (25 bp)
AAATGCTCTTTTGCAAAGCCTGCGT
LOC_Os03g27820
Os.19566.1.S1_at--55--2671Chr03:15944966..15944990 (25 bp)
AAGCCTGCGTCAATCAGGAGGCCGC
LOC_Os03g27820
Os.19566.1.S1_at--38--4811Chr03:15944995..15945019 (25 bp)
GCTCGACTCGAGCATATTTGCACCA
LOC_Os03g27820
Os.19566.1.S1_at--81--10211Chr03:15945009..15945033 (25 bp)
TATTTGCACCAGACACATGCGAAAT
LOC_Os03g27820
Os.19566.1.S1_at--877--7411Chr03:15945034..15945058 (25 bp)
GTGTTGTCACTCCATGTCTGTCTAT
LOC_Os03g27820
Os.19566.1.S1_at--497--3511Chr03:15945046..15945070 (25 bp)
CATGTCTGTCTATCCTTTTTGTTTT
LOC_Os03g27820
Os.19566.1.S1_at--279--311Chr03:15945082..15945106 (25 bp)
ATAGCCTGTGCTGATCATTTATCTA
LOC_Os03g27820
Os.19566.1.S1_at--896--171Chr03:15945106..15945130 (25 bp)
ATTTTTGGTTCATTGTCTTGCATAG
LOC_Os03g27820
Os.19566.1.S1_at--1005--271Chr03:15945171..15945195 (25 bp)
ATAGTGATATCGTGACATGCCTGGA
LOC_Os03g27820
Os.19566.1.S1_at--955--6251Chr03:15945235..15945259 (25 bp)
GATGGTGTGCCGTCTGAATTGTTAA
LOC_Os03g27820
Target Sequence 
GCCCCATCTGGTTAGAAGCACAAATGCTCTTTTGCAAAGCCTGCGTCAATCAGGAGGCCGCAACAGCTCGACTCGAGCAT
ATTTGCACCAGACACATGCGAAATGTGTTGTCACTCCATGTCTGTCTATCCTTTTTGTTTTCTTTGGCGATTATAGCCTG
TGCTGATCATTTATCTATTTTTGGTTCATTGTCTTGCATAGAGAAAAGAAAAAGGNAGTGTGGTTGCAGTGTCAAAACTT
TATAGTGATATCGTGACATGCCTGGATAAAATTTGCAACCTTCAAAATATGCTGTTGTGTAAGTCGATGGTGTGCCGTCT
GAATTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis