Browse Element(s) Details


OsAffx.3349.1.S1_at

Description tigr:9631.m02745
TID=OsAffx.3349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2778010/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3349.1.S1_at--855--2711NONE
AAGAATCTGTGAGTTCAAAGGGACT
NONE
OsAffx.3349.1.S1_at--452--5251Chr03:15914081..15914105 (25 bp)
GAATCTGTGAGTTCAAAGGGACTAC
LOC_Os03g27780
OsAffx.3349.1.S1_at--11--491Chr03:15914083..15914107 (25 bp)
ATCTGTGAGTTCAAAGGGACTACGA
LOC_Os03g27780
OsAffx.3349.1.S1_at--826--8671Chr03:15914086..15914110 (25 bp)
TGTGAGTTCAAAGGGACTACGAGAT
LOC_Os03g27780
OsAffx.3349.1.S1_at--393--6071Chr03:15914089..15914113 (25 bp)
GAGTTCAAAGGGACTACGAGATGAT
LOC_Os03g27780
OsAffx.3349.1.S1_at--761--6731Chr03:15914091..15914115 (25 bp)
GTTCAAAGGGACTACGAGATGATAC
LOC_Os03g27780
OsAffx.3349.1.S1_at--258--3291Chr03:15914094..15914118 (25 bp)
CAAAGGGACTACGAGATGATACTAC
LOC_Os03g27780
OsAffx.3349.1.S1_at--770--2311Chr03:15914095..15914119 (25 bp)
AAAGGGACTACGAGATGATACTACT
LOC_Os03g27780
OsAffx.3349.1.S1_at--874--1051Chr03:15914097..15914121 (25 bp)
AGGGACTACGAGATGATACTACTTG
LOC_Os03g27780
OsAffx.3349.1.S1_at--350--6291Chr03:15914108..15914132 (25 bp)
GATGATACTACTTGCATCGTAGTTG
LOC_Os03g27780
OsAffx.3349.1.S1_at--123--8831Chr03:15914110..15914134 (25 bp)
TGATACTACTTGCATCGTAGTTGAC
LOC_Os03g27780
Target Sequence 
AAGAATCTGTGAGTTCAAAGGGACTACGAGATGATACTACTTGCATCGTAGTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis