Browse Element(s) Details


OsAffx.25259.1.S1_s_at

Description tigr:9631.m02749
TID=OsAffx.25259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2782011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25259.1.S1_s_at--305--2971Chr03:15944347..15944371 (25 bp)
AATGGACGGCACAGCTGCAGCGCAG
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--142--4771Chr03:15944360..15944384 (25 bp)
GCTGCAGCGCAGTTTGTTCATAACA
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--237--11Chr03:15944401..15944425 (25 bp)
AGCGAGTTCGAATAACCGGTTCCAG
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--102--5491Chr03:15944464..15944488 (25 bp)
GAACATTCCAAATGCATCTGCTACT
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--280--10331Chr03:15944503..15944527 (25 bp)
TTTAGGCCTTGTTGAACAGCCAGCC
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--648--3011Chr03:15944540..15944564 (25 bp)
AATGCTCAAACTGTTCAGCCTTCGT
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--985--4531Chr03:15944567..15944591 (25 bp)
GCCCGGGTAGGCATGATCAGCAATG
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--1149--651Chr03:15944589..15944613 (25 bp)
ATGAAGTCCCAAACAGTGCCAAAGT
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--23--7691Chr03:15944617..15944641 (25 bp)
GGGTAGGTCGTCGAACACACCAAAT
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--707--8191Chr03:15944681..15944705 (25 bp)
GGAAGTCAGGTTGCCAGCATGCCTT
LOC_Os03g27820
OsAffx.25259.1.S1_s_at--799--3071Chr03:15944762..15944786 (25 bp)
AATCAAGATCGTCGGTCTCGGGTGA
LOC_Os03g27820
Target Sequence 
AATGGACGGCACAGCTGCAGCGCAGTTTGTTCATAACATCCAAGTGGACAACAAAGCGAGTTCGAATAACCGGTTCCAGG
AGCCCTCTGCTTCTGTTGTTCCAGCAGATAACAGCAAGAACATTCCAAATGCATCTGCTACTCAGTTTACAGATGATTTA
GGCCTTGTTGAACAGCCAGCCTCCACAAGTTCAAATGCTCAAACTGTTCAGCCTTCGTTTGCCCGGGTAGGCATGATCAG
CAATGAAGTCCCAAACAGTGCCAAAGTTATGGGTAGGTCGTCGAACACACCAAATGTTAACCCTGGGATTGCTACAGGGG
TCAGCAACTCAAATGGAAGTCAGGTTGCCAGCATGCCTTCCAAGCCCCACCAATCTTCATCATCATCGGGTCAACAGTAC
CAACATCAAGTTAATAATCAAGATCGTCGGTCTCGGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25259.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis