Browse Element(s) Details


OsAffx.3350.1.S1_s_at

Description tigr:9631.m02750
TID=OsAffx.3350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2783011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein
LOC_Os03g27830Os.50274.1.S2_at11/113+15945772..15948565expressed protein
LOC_Os03g27830Os.50274.1.S1_a_at11/113+15945772..15948565expressed protein
LOC_Os03g27830OsAffx.3350.1.S1_s_at11/113+15945772..15948565expressed protein
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3350.1.S1_s_at--980--4571Chr03:15948304..15948328 (25 bp)
GCGCAACTCGGCGAGGACAGCCAGA
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--116--5151Chr03:15948302..15948326 (25 bp)
GCAACTCGGCGAGGACAGCCAGATC
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--303--2551Chr03:15948300..15948324 (25 bp)
AACTCGGCGAGGACAGCCAGATCCG
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--740--3791Chr03:15948251..15948275 (25 bp)
CTCCCTTGGCTGGATCTAGGCTAGA
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--981--9311Chr03:15948250..15948274 (25 bp)
TCCCTTGGCTGGATCTAGGCTAGAC
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--880--4171Chr03:15948249..15948273 (25 bp)
CCCTTGGCTGGATCTAGGCTAGACG
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--1061--4311Chr03:15948248..15948272 (25 bp)
CCTTGGCTGGATCTAGGCTAGACGC
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--627--10871Chr03:15948246..15948270 (25 bp)
TTGGCTGGATCTAGGCTAGACGCGC
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--473--452Chr11:24421426..24421451 (25 bp)
ATCTAGGCTAGACGCGCGGGTCGGC
NONE
OsAffx.3350.1.S1_s_at--1152--5811Chr03:15948155..15948179 (25 bp)
GACCGAGGCGCGAGGGCCACGCGGA
LOC_Os03g27830
OsAffx.3350.1.S1_s_at--437--6131Chr03:15948144..15948168 (25 bp)
GAGGGCCACGCGGAGGAGGCGATAG
LOC_Os03g27830
Target Sequence 
GCGCAACTCGGCGAGGACAGCCAGATCCGGCGCCGTTGAGTTCGGATCCGGCCCTCCCTTGGCTGGATCTAGGCTAGACG
CGCGGGTCGGCGGCGAAGGTGGCGGCCGCGGCGCGAGGGCCGCGCGGAGGAGGCGGCTGCGGTGGCGGCGACCGAGGCGC
GAGGGCCACGCGGAGGAGGCGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3350.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis