Browse Element(s) Details


OsAffx.3349.1.S1_s_at

Description tigr:9631.m02745
TID=OsAffx.3349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2778011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein
LOC_Os03g27820OsAffx.25259.1.S1_s_at11/113+15939931..15945353expressed protein
LOC_Os03g27820Os.19566.1.S1_at11/113+15939931..15945353expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3349.1.S1_s_at--836--3811Chr03:15914142..15914166 (25 bp)
CTCCAGAAAAGTTGAGCCCTCCATT
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--210--6651Chr03:15914152..15914176 (25 bp)
GTTGAGCCCTCCATTAAAGAAGCAT
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--915--371Chr03:15914189..15914213 (25 bp)
ATCAAAGCTTTGTTCCGTCGGAGGC
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--651--6271Chr03:15914250..15914274 (25 bp)
GATGTCTAGAACCTGATGTCGTGGA
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--513--8031Chr03:15914287..15914311 (25 bp)
GGAGGGCTCTGCTATGCTTGCTCAA
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--106--6611Chr03:15914652..15914676 (25 bp)
GATTGTGCTGTCTGCCAATTGGTGA
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--194--5551Chr03:15914678..15914702 (25 bp)
GAAACCTGGTGAGGGCATCTCTGTT
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--44--471Chr03:15914694..15914718 (25 bp)
ATCTCTGTTCATGGTAGCATTCCGA
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--301--3591Chr03:15914711..15914735 (25 bp)
CATTCCGAGGAATTCAAGGGTTGAT
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--208--10391Chr03:15914750..15914774 (25 bp)
TTTTCTATGTTCATCCTGCCAATTG
LOC_Os03g27780
OsAffx.3349.1.S1_s_at--481--10251Chr03:15914889..15914913 (25 bp)
TTTCCAGATTCTCAACCGACAGTCC
LOC_Os03g27780
Target Sequence 
CTCCAGAAAAGTTGAGCCCTCCATTAAAGAAGCATGGGAAAGGAGGCATCAAAGCTTTGTTCCGTCGGAGGCCATCTGAT
GAATTGACTGAAGATCAGATGGACAGAGGATGTCTAGAACCTGATGTCGTGGAGGAAATATATGAGGAGGGCTCTGCTAT
GCTTGCTCAAAGATTAAAAATAAATTATCCGACAGGAAATATGTTCAAACTGCATGATTGTGCTGTCTGCCAATTGGTGA
TGAAACCTGGTGAGGGCATCTCTGTTCATGGTAGCATTCCGAGGAATTCAAGGGTTGATCCTTGGGGTGGCCCTTTTCTA
TGTTCATCCTGCCAATTGAAAAAGGAGGCTATGGAAGGGAAGCAACATTTGACAAGTATGAATGCCTTCATCTAAAGATT
TTTTTTCTCTTTGCATTAGGACAATAATTGTTGAATGCTTTTTTATTTTTAATTTCCAGATTCTCAACCGACAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3349.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis