Browse Element(s) Details


Os.22477.1.S1_at

Description gb:AK073283.1
DB_XREF= gi:32983306
TID=Os.22477.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029D12, full insert sequence.
FL= gb:AK061587.1 gb:AK073283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2777010/11heme oxygenase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27740OsAffx.25257.1.S1_at11/113+15880442..15880855expressed protein
LOC_Os03g27750OsAffx.25258.2.S1_x_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27750OsAffx.25258.2.S1_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein
LOC_Os03g27800Os.6794.1.S1_at11/113+15917898..15922104Paramyosin, putative, expressed
LOC_Os03g27810NANA3+15928756..15929655hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006788biological_processheme oxidation
GO:0010019biological_processchloroplast-nucleus signaling pathway
GO:0010024biological_processphytochromobilin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004392molecular_functionheme oxygenase (decyclizing) activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22477.1.S1_at--14--8311Chr03:15903269..15903293 (25 bp)
GGCTTAGTGCAGTCATTTTTGTCGA
LOC_Os03g27770
Os.22477.1.S1_at--277--2691Chr03:15903184..15903208 (25 bp)
AAGCTGATCAGCGAGCACTATCCTG
LOC_Os03g27770
Os.22477.1.S1_at--908--3091Chr03:15903134..15903158 (25 bp)
AATAGCCTCTTTTCTGGCTTGCATG
LOC_Os03g27770
Os.22477.1.S1_at--358--8551Chr03:15903095..15903119 (25 bp)
TGGAGTGAGCTCTTGCTTTCAGCAA
LOC_Os03g27770
Os.22477.1.S1_at--519--8991Chr03:15903052..15903076 (25 bp)
TGAAGATGCTTGCTGCTGTCGATCA
LOC_Os03g27770
Os.22477.1.S1_at--649--9391Chr03:15903034..15903058 (25 bp)
TCGATCAGGATCTCACGCGTTCAAT
LOC_Os03g27770
Os.22477.1.S1_at--1078--9191Chr03:15903001..15903025 (25 bp)
TGCCAGCCTGACACAATTCACTTAG
LOC_Os03g27770
Os.22477.1.S1_at--1071--6971Chr03:15902913..15902937 (25 bp)
GTACCTCACCACATTATCCATTTAT
LOC_Os03g27770
Os.22477.1.S1_at--516--5191Chr03:15902879..15902903 (25 bp)
GAATTCGCTTTGCTTGTACCAATCC
LOC_Os03g27770
Os.22477.1.S1_at--581--231Chr03:15902811..15902835 (25 bp)
ATATTTTGCTTTTGCCTGTACCAAC
LOC_Os03g27770
Os.22477.1.S1_at--755--3251NONE
CAACCCCTGGTGGAGTTTTTGCTGG
NONE
Target Sequence 
GGCTTAGTGCAGTCATTTTTGTCGAAGACTACACGTCTTAACTATGTTGAAGTCTGGTACAGAAGGATCTTNTGGTGTGA
GACTGAAGCTGATCAGCGAGCACTATCCTGGAGATTGAAAACACCAGGCCACAACAATAGCCTCTTTTCTGGCTTGCATG
GTGGAGCTGCNCGTTGGAGTGAGCTCTTGCTTTCAGCAACTTCGAACTGTGCAAAGTTGAAGATGCTTGCTGCTGTCGAT
CAGGATCTCACGCGTTCAATCGCAATGATGCCAGCCTGACACAATTCACTTAGCAGCAGAACACCATGCTAGCCAGCCAG
GATCCCCCCATGCCTGCCAAAGCTTCGTCTCCTCTTGTACCTCACCACATTATCCATTTATCCTTGCAATGAATTCGCTT
TGCTTGTACCAATCCTAGCTACTACTACTNCTACCATCTTACATTATCCTTGCAATCAATATTTTGCTTTTGCCTGTACC
AACCCCTGGTGGAGTTTTTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis