Browse Element(s) Details


Os.51941.1.S1_s_at

Description gb:AK103693.1
DB_XREF= gi:32988902
TID=Os.51941.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136I20, full insert sequence.
FL= gb:AK103693.1 gb:AK064346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2776011/11nodulation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27710OsAffx.29576.5.S1_at5/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.19006.1.S1_at3/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710Os.54924.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_x_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27720Os.47463.1.S1_x_at6/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27720Os.14491.2.S1_x_at5/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27730NANA3+15869253..15875240transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27740OsAffx.25257.1.S1_at11/113+15880442..15880855expressed protein
LOC_Os03g27750OsAffx.25258.2.S1_x_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27750OsAffx.25258.2.S1_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed
LOC_Os03g27780OsAffx.3349.1.S1_s_at11/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27780OsAffx.3349.1.S1_at10/113+15911407..15914957Protein phosphatase 2C containing protein, expressed
LOC_Os03g27790OsAffx.13083.1.S1_at11/113+15915809..15916382EF hand family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51941.1.S1_s_at--899--10171Chr03:15887448..15887472 (25 bp)
TATAAGCCCAGACTCAACACAACAT
LOC_Os03g27760
Os.51941.1.S1_s_at--529--6951Chr03:15887400..15887424 (25 bp)
GTAGATGATTACACCCGTGATGCTC
LOC_Os03g27760
Os.51941.1.S1_s_at--595--6271Chr03:15887208..15887232 (25 bp)
GATGTCCTGGATTTCCTCAAAGTGC
LOC_Os03g27760
Os.51941.1.S1_s_at--288--8071Chr03:15887180..15887204 (25 bp)
GGAGCAAACTAGTCAGCCGACACGT
LOC_Os03g27760
Os.51941.1.S1_s_at--659--2151Chr03:15887147..15887171 (25 bp)
ACACCAAACCACTTTCGGAGCAAAT
LOC_Os03g27760
Os.51941.1.S1_s_at--1039--5911Chr03:15887074..15887098 (25 bp)
GAGCTTCTTGAATGCTGACTACAGA
LOC_Os03g27760
Os.51941.1.S1_s_at--340--9191Chr03:15887038..15887062 (25 bp)
TGCCTTCACACTCCCTGTATAGATA
LOC_Os03g27760
Os.51941.1.S1_s_at--46--3111Chr03:15886983..15887007 (25 bp)
AATAGCTGGCCTTGATGTGCCTGGC
LOC_Os03g27760
Os.51941.1.S1_s_at--35--10771Chr03:15886951..15886975 (25 bp)
TTGATGGTGCATTGCCACGGTTGCC
LOC_Os03g27760
Os.51941.1.S1_s_at--26--9171Chr03:15886930..15886954 (25 bp)
TGCCCACGAGTGTTCTTTGATAGGT
LOC_Os03g27760
Os.51941.1.S1_s_at--820--4891Chr03:15886818..15886842 (25 bp)
GCTTATTCTTCTCCCATGTTAATGA
LOC_Os03g27760
Target Sequence 
TATAAGCCCAGACTCAACACAACATCATTAATACGGAGTCTGAAACAAGTAGATGATTACACCCGTGATGCTCTTGAAAA
TCTAAAGAGTATCAACCACATTACTATCTACTATGAGGATCTCATCCGAAATAGAACAAAACTTCTTGATGTCCTGGATT
TCCTCAAAGTGCCAAGGAGCAAACTAGTCAGCCGACACGTGAAGATACACACCAAACCACTTTCGGAGCAAATTGAAAAT
TGGGATGAAGTCTACAATGCTCTAAATGGCACTCAGTATGAGAGCTTCTTGAATGCTGACTACAGAATATGACAGTGTGC
CTTCACACTCCCTGTATAGATATATCCTTTTTCTGGTTACATTTCTTTTTAAAATAGCTGGCCTTGATGTGCCTGGCGAA
AATTTTGATGGTGCATTGCCACGGTTGCCCACGAGTGTTCTTTGATAGGTTCACTAATTGTCATAGCAGGGTTTTGTTTT
TTGTTTTATGTTTTCTGTAACTGATATGCTCAGGATTCTAATCTTGTGTATTGCAGTGCTTATTCTTCTCCCATGTTAAT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis