Browse Element(s) Details


OsAffx.25257.1.S1_at

Description tigr:9631.m02741
TID=OsAffx.25257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2774011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27700OsAffx.3348.1.S1_at10/113+15856534..15860546hypothetical protein
LOC_Os03g27700OsAffx.14655.1.S1_at1/113+15856534..15860546hypothetical protein
LOC_Os03g27710OsAffx.29576.5.S1_at5/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.19006.1.S1_at3/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710Os.54924.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_x_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27720Os.47463.1.S1_x_at6/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27720Os.14491.2.S1_x_at5/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27730NANA3+15869253..15875240transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27740OsAffx.25257.1.S1_at11/113+15880442..15880855expressed protein
LOC_Os03g27750OsAffx.25258.2.S1_x_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27750OsAffx.25258.2.S1_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27760Os.51941.1.S1_s_at11/113+15886800..15890984nodulation protein, putative, expressed
LOC_Os03g27770Os.22477.1.S1_at10/113+15902760..15906196heme oxygenase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25257.1.S1_at--935--9571Chr03:15880488..15880512 (25 bp)
TCTTCCTTTCCTCCGACATGATCAT
LOC_Os03g27740
OsAffx.25257.1.S1_at--714--10291Chr03:15880494..15880518 (25 bp)
TTTCCTCCGACATGATCATCGTGTG
LOC_Os03g27740
OsAffx.25257.1.S1_at--110--4111Chr03:15880501..15880525 (25 bp)
CGACATGATCATCGTGTGCTCACAG
LOC_Os03g27740
OsAffx.25257.1.S1_at--820--711Chr03:15880505..15880529 (25 bp)
ATGATCATCGTGTGCTCACAGGGAA
LOC_Os03g27740
OsAffx.25257.1.S1_at--867--9411Chr03:15880512..15880536 (25 bp)
TCGTGTGCTCACAGGGAAGACCTCT
LOC_Os03g27740
OsAffx.25257.1.S1_at--946--7311Chr03:15880516..15880540 (25 bp)
GTGCTCACAGGGAAGACCTCTCATT
LOC_Os03g27740
OsAffx.25257.1.S1_at--650--2111Chr03:15880522..15880546 (25 bp)
ACAGGGAAGACCTCTCATTGCGGAG
LOC_Os03g27740
OsAffx.25257.1.S1_at--598--2771Chr03:15880528..15880552 (25 bp)
AAGACCTCTCATTGCGGAGGCGGCG
LOC_Os03g27740
OsAffx.25257.1.S1_at--804--3391Chr03:15880568..15880592 (25 bp)
CAGCAGCAGAGACACCTGCTATCGT
LOC_Os03g27740
OsAffx.25257.1.S1_at--1097--1351Chr03:15880575..15880599 (25 bp)
AGAGACACCTGCTATCGTCGTCGTC
LOC_Os03g27740
OsAffx.25257.1.S1_at--307--1951Chr03:15880664..15880688 (25 bp)
ACGGCGATGACCCAGGGCACGCTCT
LOC_Os03g27740
Target Sequence 
TCTTCCTTTCCTCCGACATGATCATCGTGTGCTCACAGGGAAGACCTCTCATTGCGGAGGCGGCGGCGGCGGCGGCGGCG
CAGCAGCAGAGACACCTGCTATCGTCGTCGTCGTCGGCACCGCGTTCCGGCGGCGACGTCGAAGAAGCTGCCGCCGGCGG
CGGCAAGGGGACGACGACGGCGATGACCCAGGGCACGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis