Browse Element(s) Details


Os.50304.1.S1_x_at

Description gb:AK070997.1
DB_XREF= gi:32981020
TID=Os.50304.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077I17, full insert sequence.
FL= gb:AK070997.1 gb:AK120625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3259011/11Transcription initiation factor TFIID component TAF4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32550Os.1709.1.S1_x_at11/113+18570532..18572832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32560Os.54287.1.S1_at6/113+18573417..18576957hypothetical protein
LOC_Os03g32560OsAffx.27653.1.S1_x_at2/113+18573417..18576957hypothetical protein
LOC_Os03g32570OsAffx.25341.1.S1_at11/113+18579201..18580260hypothetical protein
LOC_Os03g32580Os.7982.1.S1_at10/113+18590819..18593412BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g32590Os.50304.1.S1_x_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.1.S2_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.2.S1_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32600NANA3+18607360..18615222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50304.1.S1_x_at--1063--6591Chr03:18598019..18598043 (25 bp)
GTTGGAGGTCCAATTGTACCACTTA
LOC_Os03g32590
Os.50304.1.S1_x_at--869--10051Chr03:18597958..18597982 (25 bp)
TAGTCCAGGGAGCTGTTACCTCAGT
LOC_Os03g32590
Os.50304.1.S1_x_at--463--851Chr03:18597923..18597947 (25 bp)
ATGGCAGCACGACCAACGTTGCAAA
LOC_Os03g32590
Os.50304.1.S1_x_at--495--7751Chr03:18597719..18597743 (25 bp)
GGTGTTCCTGAAAACCAACCATCAA
LOC_Os03g32590
Os.50304.1.S1_x_at--130--391Chr03:18597693..18597717 (25 bp)
ATCAGGTACTTCTAAATCTTTCAAC
LOC_Os03g32590
Os.50304.1.S1_x_at--1088--2191Chr03:18597665..18597689 (25 bp)
ACAAACTCAAGTCAGCCTCATCGAT
LOC_Os03g32590
Os.50304.1.S1_x_at--21--9051Chr03:18596048..18596072 (25 bp)
TGCAGCAGCTTCTAAAACACCTCAA
LOC_Os03g32590
Os.50304.1.S1_x_at--747--5551Chr03:18596000..18596024 (25 bp)
GAAACCTTTGGACGCTTTAGGCTCA
LOC_Os03g32590
Os.50304.1.S1_x_at--332--5671Chr03:18595860..18595884 (25 bp)
GACATCCGGAGGTTATCATGATCAA
LOC_Os03g32590
Os.50304.1.S1_x_at--590--5951Chr03:18595670..18595694 (25 bp)
GAGCAACTTTTCTCTGCTCCAAAGG
LOC_Os03g32590
Os.50304.1.S1_x_at--646--9651Chr03:18595631..18595655 (25 bp)
TCAGAAGCTGCTCGGATGGTCGTAC
LOC_Os03g32590
Target Sequence 
GTTGGAGGTCCAATTGTACCACTTAGACCACAAATGGCAGATTCCAGTCAAAGAGGACAATTAGTCCAGGGAGCTGTTAC
CTCAGTGACTGGGAGCATGGCAGCACGACCAACGTTGCAAACTAATATATCTCCATGGCAACAAGTAAACAAAGAGCAGA
AAACTAAATCTTTCCCTCCAACAGAACACACAAATAAGGGTGTTGGTGTTCCTGAAAACCAACCATCAACATCAGGTACT
TCTAAATCTTTCAACACAACAAACTCAAGTCAGCCTCATCGATCTCATGGCACTCAAGCAGAACCAAACATGCAGATCCA
ACCTGCTACACAAACACCTCCCCCTGCAGCAGCTTCTAAAACACCTCAAAAGAAGGCATCTGCTGGACAGAAGAAACCTT
TGGACGCTTTAGGCTCATCCCCTCCACCATCTAGCAAAAAGCAGAAGACATCCGGAGGTTATCATGATCAAAGTATTGAC
CAGCTGAATGATGTTACTGCAGTTAGTGGTGTTAATCTGAGGGAAGAAGAGGAGCAACTTTTCTCTGCTCCAAAGGAGGA
GAGTCGAGTTTCAGAAGCTGCTCGGATGGTCGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50304.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis