Browse Element(s) Details


OsAffx.13160.1.S1_x_at

Description tigr:9631.m03192
TID=OsAffx.13160.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3261011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32580Os.7982.1.S1_at10/113+18590819..18593412BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g32590Os.50304.1.S1_x_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.1.S2_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.2.S1_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32600NANA3+18607360..18615222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein
LOC_Os03g32620Os.23510.1.S1_at10/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32620Os.23510.3.S1_at2/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32630Os.21201.1.S1_at10/113+18641776..18644252ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13160.1.S1_x_at--279--6571Chr03:18618851..18618875 (25 bp)
GATTCGGCTGGTGCGGAGGGAGGCA
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--365--8511Chr03:18618818..18618842 (25 bp)
TGGCAATGGCGAGTGACCGGCCAAC
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--841--3191Chr03:18618815..18618839 (25 bp)
CAATGGCGAGTGACCGGCCAACGAC
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--936--9131Chr03:18618772..18618796 (25 bp)
TGCGGGAGGACCTAAGGAACACAAT
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--285--2991Chr03:18618732..18618755 (24 bp)
AATGAGGAGGCCCACGACCTGTGGA
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--1073--4131Chr03:18618589..18618613 (25 bp)
CGCGACGGAGGCTGTGGTGCAGTGT
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--875--791Chr03:18618471..18618495 (25 bp)
ATGGGCAAACAAAGTGGCAGTCGAC
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--378--2411Chr03:18618465..18618489 (25 bp)
AAACAAAGTGGCAGTCGACCTTGCT
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--265--4091Chr03:18618450..18618474 (25 bp)
CGACCTTGCTCTTGCGACGGCGAAG
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--1100--8391Chr03:18618420..18618444 (25 bp)
GGCGCCAGTGGCGACGATTGGAGCA
LOC_Os03g32610
OsAffx.13160.1.S1_x_at--193--4111Chr03:18618371..18618395 (25 bp)
CGAACGGTGATGGAAGCTCGGCCTC
LOC_Os03g32610
Target Sequence 
GATTCGGCTGGTGCGGAGGGAGGCAACGACGGGTGGCAATGGCGAGTGACCGGCCAACGACGACGAGCGGTGGACGGGAT
GCGGGAGGACCTAAGGAACACAATGAGAGGGGTTAGAGGGAATGAGGAGGCCCACGACCTGTGGATGAGGGGGACGCGAC
GGAGGCTGTGGTGCAGTGTGAGGCGGCCGGGAATGGCGCCAAACGGCGGCCGGAGGCGGCAGACGGTGGTGGAGCTCGGG
ATGCACGGTGGGAGGGTGGTTGCGGCGGTGGAATGGGCAAACAAAGTGGCAGTCGACCTTGCTCTTGCGACGGCGAAGGC
AATGGCGCCAGTGGCGACGATTGGAGCAGCGGTGGCAGGCGGCTGGAGGCGGCGAACGGTGATGGAAGCTCGGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13160.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis