Browse Element(s) Details


Os.23510.3.S1_at

Description gb:NM_184651.1
DB_XREF= gi:34896391
TID=Os.23510.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1004_D04.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1004_D04.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g326202/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32600NANA3+18607360..18615222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein
LOC_Os03g32620Os.23510.1.S1_at10/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32620Os.23510.3.S1_at2/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32630Os.21201.1.S1_at10/113+18641776..18644252ABC transporter family protein, expressed
LOC_Os03g32636NANA3+18645935..18647026hypothetical protein
LOC_Os03g32642NANA3+18649413..18649869hypothetical protein
LOC_Os03g32650Os.14919.1.S1_at4/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650Os.56216.1.S1_at2/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650OsAffx.29313.1.S1_at1/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32660NANA3+18662070..18662612hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23510.3.S1_at--470--6031Chr03:18632852..18632876 (25 bp)
GAGATACCTGCAAATGTTGGATGAT
LOC_Os03g32620
Os.23510.3.S1_at--406--2631Chr03:18632790..18632814 (25 bp)
AACCTAGCAAGGTCCTGGTAGCAGT
LOC_Os03g32620
Os.23510.3.S1_at--475--5691Chr03:18630838..18630862 (25 bp)
GACTTGCCCAATGAAGATGCCCATA
NONE
Os.23510.3.S1_at--1125--6331Chr03:18630823..18630847 (25 bp)
GATGCCCATACTGAAGGGAAGCTTA
NONE
Os.23510.3.S1_at--764--5311Chr03:18630811..18630835 (25 bp)
GAAGGGAAGCTTAACATTTTCAATC
NONE
Os.23510.3.S1_at--381--5531Chr03:18630770..18630794 (25 bp)
GAAACATTTCCATACTGAAGTGAAG
NONE
Os.23510.3.S1_at--966--8531Chr03:18630723..18630747 (25 bp)
TGGACCATCAGAGTACAAGGACATT
NONE
Os.23510.3.S1_at--890--2711Chr03:18630695..18630719 (25 bp)
AAGCATGACTGAAAAACTCGAGCAA
NONE
Os.23510.3.S1_at--676--5591NONE
GAAATACTCACCGTTATCTTTTTGA
NONE
Os.23510.3.S1_at--563--36712Chr12:8319452..8319471 (20 bp)
CTTTTTGATTACACATTGGCTCCGC
NONE
Os.23510.3.S1_at--64--31Chr03:18629568..18629592 (25 bp)
ATTGGCTCCGCTTATGGGCTATCCT
NONE
Target Sequence 
GAGATACCTGCAAATGTTGGATGATTTTGATGATGATGTTCTCAGAAATAGACAAGTAACCAAACCTAGCAAGGTCCTGG
TAGCAGTGGTAAAATCCAATAAAAATAAGTTTCTACAATTTCTTAAATCTTGTGATAACATAGTAGAAGCTAGTACACTT
GAAGAAGATGACTTGCCCAATGAAGATGCCCATACTGAAGGGAAGCTTAACATTTTCAATCCAAAACAACAGGAACAGAA
ACATTTCCATACTGAAGTGAAGAAGATGACAATGATGATGACATTGGACCATCAGAGTACAAGGACATTAAAAAGCATGA
CTGAAAAACTCGAGCAAAGAACAGAAATACTCACCGTTATCTTTTTGATTACACATTGGCTCCGCTTATGGGCTATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23510.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis