Browse Element(s) Details


Os.23510.1.S1_at

Description gb:AK106680.1
DB_XREF= gi:32991889
TID=Os.23510.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1004_D04.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B02, full insert sequence.
FL= gb:AK106680.1 gb:AK119281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3262010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32600NANA3+18607360..18615222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein
LOC_Os03g32620Os.23510.1.S1_at10/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32620Os.23510.3.S1_at2/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32630Os.21201.1.S1_at10/113+18641776..18644252ABC transporter family protein, expressed
LOC_Os03g32636NANA3+18645935..18647026hypothetical protein
LOC_Os03g32642NANA3+18649413..18649869hypothetical protein
LOC_Os03g32650Os.14919.1.S1_at4/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650Os.56216.1.S1_at2/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650OsAffx.29313.1.S1_at1/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32660NANA3+18662070..18662612hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23510.1.S1_at--973--2271Chr03:18634834..18634858 (25 bp)
AAATCGCTTCCATCATTTTGAGGAT
LOC_Os03g32620
Os.23510.1.S1_at--101--8531Chr03:18634810..18634834 (25 bp)
TGGAAAGTGCTCATGCGGTGACTAT
LOC_Os03g32620
Os.23510.1.S1_at--806--4671Chr03:18634796..18634820 (25 bp)
GCGGTGACTATTGGTGATCTTCTGT
LOC_Os03g32620
Os.23510.1.S1_at--502--6431Chr03:18634781..18634805 (25 bp)
GATCTTCTGTTGTTCCTTGATGTGT
LOC_Os03g32620
Os.23510.1.S1_at--827--8231Chr03:18634716..18634740 (25 bp)
GGCAAATGGCAATCTTCTAGGAAAC
LOC_Os03g32620
Os.23510.1.S1_at--6--651NONE
ATGCATGCTCTATTGTTTTGGGTGA
NONE
Os.23510.1.S1_at--1147--2371Chr03:18633757..18633781 (25 bp)
AAACGAGCTTGCCTACTGGCTTATT
LOC_Os03g32620
Os.23510.1.S1_at--1014--9911Chr03:18633744..18633768 (25 bp)
TACTGGCTTATTCTTAGGCTATATA
LOC_Os03g32620
Os.23510.1.S1_at--396--3011Chr03:18633431..18633455 (25 bp)
AATGACTGTTGTACGCCTGGTAGCA
LOC_Os03g32620
Os.23510.1.S1_at--9--5351Chr03:18633286..18633310 (25 bp)
GAAGTATTCTGGTAACTCATCATGA
LOC_Os03g32620
Os.23510.1.S1_at--600--6451Chr03:18633263..18633287 (25 bp)
GATAATTTTTATTCAGCGTGCGGAA
LOC_Os03g32620
Target Sequence 
AAATCGCTTCCATCATTTTGAGGATGGAAAGTGCTCATGCGGTGACTATTGGTGATCTTCTGTTGTTCCTTGATGTGTTA
AAGGAATCCATACAAGTTATATGTGATATAATGTGTTTGGCAAATGGCAATCTTCTAGGAAACCAAGTTATCATGCATGC
TCTATTGTTTTGGGTGATAGTTGGGCAAGGCAACCATAAGGGTAAAATGCAGCCTTTGGAAGTGAAACGAGCTTGCCTAC
TGGCTTATTCTTAGGCTATATAACCTTCTACTACCTCCTTATGGAAGCTGAGGGATTGTTTGTGCCGGATCATCCTGTAA
TTGCTCATCTTGTAGAGATGAAGAGTATTGTAGAAAAGGCCAATATATCTTCCAAGACAACAAGGAGACATTAATGACTG
TTGTACGCCTGGTAGCAGTACCATGGATGTGCTAGACAAGATAATTTTTTTGGACAAGGACAATTTACTAGTACGGGATA
AGATAAAAATAGGATCTGTTCTTCTTTACTTTACTATAAAGTACAAACATGATAATTGAAGTATTCTGGTAACTCATCAT
GATAATTTTTATTCAGCGTGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis