Browse Element(s) Details


Os.21201.1.S1_at

Description gb:AK102700.1
DB_XREF= gi:32987909
TID=Os.21201.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.21201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ABC transporter (OJ1004_D04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103K23, full insert sequence.
FL= gb:AK102700.1 gb:AK060827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3263010/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein
LOC_Os03g32620Os.23510.1.S1_at10/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32620Os.23510.3.S1_at2/113+18632704..18637724pentatricopeptide, putative, expressed
LOC_Os03g32630Os.21201.1.S1_at10/113+18641776..18644252ABC transporter family protein, expressed
LOC_Os03g32636NANA3+18645935..18647026hypothetical protein
LOC_Os03g32642NANA3+18649413..18649869hypothetical protein
LOC_Os03g32650Os.14919.1.S1_at4/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650Os.56216.1.S1_at2/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650OsAffx.29313.1.S1_at1/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32660NANA3+18662070..18662612hypothetical protein
LOC_Os03g32664NANA3+18665328..18665678hypothetical protein
LOC_Os03g32670OsAffx.3390.1.S1_at11/113+18666875..18667171hypothetical protein
LOC_Os03g32670OsAffx.3390.1.S1_x_at11/113+18666875..18667171hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21201.1.S1_at--947--9731Chr03:18642303..18642327 (25 bp)
TCAATATCAATGTCACATCCCCACA
LOC_Os03g32630
Os.21201.1.S1_at--913--5851Chr03:18642264..18642288 (25 bp)
GAGCCAACAAATCACCTAGACATGC
LOC_Os03g32630
Os.21201.1.S1_at--890--1291Chr03:18642220..18642244 (25 bp)
AGATGCACTGGATGAATTCACTGGT
LOC_Os03g32630
Os.21201.1.S1_at--201--10511Chr03:18642204..18642228 (25 bp)
TTCACTGGTGGTGTGGTCTTGGTTA
LOC_Os03g32630
Os.21201.1.S1_at--41--7131Chr03:18642189..18642213 (25 bp)
GTCTTGGTTAGCCATGACTCGAGAT
LOC_Os03g32630
Os.21201.1.S1_at--832--5011Chr03:18642009..18642033 (25 bp)
GCAGGATACTGCTTATTCTTTATAG
LOC_Os03g32630
Os.21201.1.S1_at--237--10011Chr03:18641987..18642011 (25 bp)
TAGACTGGGCTGGTAAACTTAATGT
LOC_Os03g32630
Os.21201.1.S1_at--1003--6091NONE
GAGTCTGAAACACCTATTCGAGCTG
NONE
Os.21201.1.S1_at--64--4091Chr03:18641901..18641925 (25 bp)
CGAGCTGTTCTTGCTTTTTGCATGA
LOC_Os03g32630
Os.21201.1.S1_at--1159--731Chr03:18641845..18641869 (25 bp)
ATGTTTTCTATGATTTTGCTGCCAA
LOC_Os03g32630
Os.21201.1.S1_at--1081--10391Chr03:18641832..18641856 (25 bp)
TTTTGCTGCCAATTACTCTGTACTA
LOC_Os03g32630
Target Sequence 
TCAATATCAATGTCACATCCCCACATTCTCCTGCTGGATGAGCCAACAAATCACCTAGACATGCAAAGTATCGATGCATT
GGCAGATGCACTGGATGAATTCACTGGTGGTGTGGTCTTGGTTAGCCATGACTCGAGATTGATCTCTAGAGTGTGTGACG
ATGAGCAGAGGAGTGAGATATGGGTTGTAGAAGATGGCACTGTGAACAAATTTGATGGAACATTTGAGGACTACAAGGAT
GAACTTTTGGAAGAAATCAAAAAGGAAGTTGAAGNGTAATGTGTTTTTATAGTTGCAGGATACTGCTTATTCTTTATAGA
CTGGGCTGGTAAACTTAATGTACTAGTACTTATTTTCTTTGGTTTGCAGAGTATTTGTATGGTTGAGTCTGAAACACCTA
TTCGAGCTGTTCTTGCTTTTTGCATGATCTAAGAGGTTCCAGGATGAGTCTGATAAATATGTTTTCTATGATTTTGCTGC
CAATTACTCTGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis