Browse Element(s) Details


OsAffx.3390.1.S1_x_at

Description gb:NM_184646.1
DB_XREF= gi:34896381
TID=OsAffx.3390.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1004_D04.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3267011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32630Os.21201.1.S1_at10/113+18641776..18644252ABC transporter family protein, expressed
LOC_Os03g32636NANA3+18645935..18647026hypothetical protein
LOC_Os03g32642NANA3+18649413..18649869hypothetical protein
LOC_Os03g32650Os.14919.1.S1_at4/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650Os.56216.1.S1_at2/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32650OsAffx.29313.1.S1_at1/113+18655240..18661064transposon protein, putative, Mutator sub-class
LOC_Os03g32660NANA3+18662070..18662612hypothetical protein
LOC_Os03g32664NANA3+18665328..18665678hypothetical protein
LOC_Os03g32670OsAffx.3390.1.S1_at11/113+18666875..18667171hypothetical protein
LOC_Os03g32670OsAffx.3390.1.S1_x_at11/113+18666875..18667171hypothetical protein
LOC_Os03g32690NANA3+18685907..18688264hypothetical protein
LOC_Os03g32700NANA3+18689914..18692485retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3390.1.S1_x_at--430--5551Chr03:18666908..18666932 (25 bp)
GACACAAGCCGGTGGCAACAAAAGC
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--323--5133Chr12:8999435..8999498 (25 bp)
GCAACAAAAGCAAACCGGTGGCGAA
NONE
OsAffx.3390.1.S1_x_at--993--7531Chr03:18666939..18666963 (25 bp)
GTGGCGAAGACCAGTCGGCGACAAA
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--476--7191Chr03:18666952..18666976 (25 bp)
GTCGGCGACAAAAGAAGCAGATGGT
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--146--3091Chr03:18666980..18667004 (25 bp)
AATAGAGACATCCATGAGCAGCAGT
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--914--5931Chr03:18666995..18667019 (25 bp)
GAGCAGCAGTATAATAGGCCAGCCA
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--996--4431Chr03:18667016..18667040 (25 bp)
GCCATCAAGGCGGAGACACCAATCA
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--820--8051Chr03:18667027..18667051 (25 bp)
GGAGACACCAATCAGCAATGGAGAA
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--1122--5951Chr03:18667047..18667071 (25 bp)
GAGAAGGCAAGCTGGTGATGACAAT
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--1053--3191Chr03:18667068..18667092 (25 bp)
CAATGATGCCATTCAATGGTGACGA
LOC_Os03g32670
OsAffx.3390.1.S1_x_at--519--2972Chr03:18667082..18667106 (25 bp)
AATGGTGACGAAGACGTGCAGCCGT
LOC_Os03g32670
Target Sequence 
GACACAAGCCGGTGGCAACAAAAGCAAACCGGTGGCGAAGACCAGTCGGCGACAAAAGAAGCAGATGGTGAAAATAGAGA
CATCCATGAGCAGCAGTATAATAGGCCAGCCATCAAGGCGGAGACACCAATCAGCAATGGAGAAGGCAAGCTGGTGATGA
CAATGATGCCATTCAATGGTGACGAAGACGTGCAGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3390.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis