Browse Element(s) Details


Os.50304.1.S2_at

Description gb:AK120625.1
DB_XREF= gi:37990248
TID=Os.50304.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152M06, full insert sequence.
FL= gb:AK070997.1 gb:AK120625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3259011/11Transcription initiation factor TFIID component TAF4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32550Os.1709.1.S1_x_at11/113+18570532..18572832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32560Os.54287.1.S1_at6/113+18573417..18576957hypothetical protein
LOC_Os03g32560OsAffx.27653.1.S1_x_at2/113+18573417..18576957hypothetical protein
LOC_Os03g32570OsAffx.25341.1.S1_at11/113+18579201..18580260hypothetical protein
LOC_Os03g32580Os.7982.1.S1_at10/113+18590819..18593412BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g32590Os.50304.1.S1_x_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.1.S2_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.2.S1_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32600NANA3+18607360..18615222retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32610OsAffx.13160.1.S1_x_at11/113+18618168..18619139hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50304.1.S2_at--320--6731Chr03:18594387..18594411 (25 bp)
GTTCTTCTGGTTCCATGCCAGGCAA
LOC_Os03g32590
Os.50304.1.S2_at--1031--3231Chr03:18594365..18594389 (25 bp)
CAACATGTTGCCTCGTACGTCTTCA
LOC_Os03g32590
Os.50304.1.S2_at--694--2831Chr03:18593874..18593898 (25 bp)
AAGTGACCCGGAGCATTACGGTGAA
LOC_Os03g32590
Os.50304.1.S2_at--356--6391Chr03:18593843..18593867 (25 bp)
GATCGCAGCACTTGAGAGGGAACCT
LOC_Os03g32590
Os.50304.1.S2_at--1138--6651Chr03:18593813..18593837 (25 bp)
GTTGAAATCCTCTTTGCTGTTCCAG
LOC_Os03g32590
Os.50304.1.S2_at--149--811Chr03:18593784..18593808 (25 bp)
ATGGGAGATCACCAGCAGAATCATC
LOC_Os03g32590
Os.50304.1.S2_at--584--4951Chr03:18593733..18593757 (25 bp)
GCATTTCGAGTTGCAGTGTTCAATT
LOC_Os03g32590
Os.50304.1.S2_at--122--6771Chr03:18593716..18593740 (25 bp)
GTTCAATTTTGGTTGTGCTCTTGGG
LOC_Os03g32590
Os.50304.1.S2_at--439--5431Chr03:18593588..18593612 (25 bp)
GAACCGACATCATCAGCCATTTTTT
LOC_Os03g32590
Os.50304.1.S2_at--519--7071Chr03:18593514..18593538 (25 bp)
GTAATCGCTTCCTATGTCAGGCATG
LOC_Os03g32590
Os.50304.1.S2_at--190--1771Chr03:18593450..18593474 (25 bp)
ACCTGATTGTGTAGTTAGCTCTTTT
LOC_Os03g32590
Target Sequence 
GTTCTTCTGGTTCCATGCCAGGCAACATGTTGCCTCGTACGTCTTCACCGAAACATGGAAAAGGTTCAAGAGAACAACAG
GAAATTGAAAAGACAGGTGGTGTTAGAAGATCATCACACGTAAAAGTGACCCGGAGCATTACGGTGAAGGATGTGATCGC
AGCACTTGAGAGGGAACCTCAGATGTTGAAATCCTCTTTGCTGTTCCAGCTATATGGGAGATCACCAGCAGAATCATCTG
CGAAATAGTTGCAGTATAACCATTGCATTTCGAGTTGCAGTGTTCAATTTTGGTTGTGCTCTTGGGGGCATTGTATTGAG
TAGAATGGTTGATAGAAGATGAGTCTAATACCAAGCGATGGGTTTGATTGGTTGATAAATCATTTTTGCAGGATTTAACA
ATCACTAGTGAACCGACATCATCAGCCATTTTTTTTAACGAGAATAGTGTGCATATGTGTTCTTTTATCTCATGAATAAT
ATTGTAATCGCTTCCTATGTCAGGCATGATATAATAAACAGCATCAAGCTCATTATGTAGAGCTGATACCTGATTGTGTA
GTTAGCTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50304.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis