Browse Element(s) Details


OsAffx.25341.1.S1_at

Description tigr:9631.m03188
TID=OsAffx.25341.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3257011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32526Os.8207.1.S1_at2/113+18557959..18563602expressed protein
LOC_Os03g32532OsAffx.27736.1.S1_at10/113+18564857..18565083NA
LOC_Os03g32540OsAffx.14902.1.A1_at4/113+18566095..18567975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32550Os.1709.1.S1_x_at11/113+18570532..18572832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32560Os.54287.1.S1_at6/113+18573417..18576957hypothetical protein
LOC_Os03g32560OsAffx.27653.1.S1_x_at2/113+18573417..18576957hypothetical protein
LOC_Os03g32570OsAffx.25341.1.S1_at11/113+18579201..18580260hypothetical protein
LOC_Os03g32580Os.7982.1.S1_at10/113+18590819..18593412BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g32590Os.50304.1.S1_x_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.1.S2_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.2.S1_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25341.1.S1_at--395--1411Chr03:18579605..18579629 (25 bp)
AGACACCACATTCACCAGCTGCATG
LOC_Os03g32570
OsAffx.25341.1.S1_at--854--2071Chr03:18579598..18579622 (25 bp)
ACATTCACCAGCTGCATGCTAGCTA
LOC_Os03g32570
OsAffx.25341.1.S1_at--336--9071Chr03:18579582..18579606 (25 bp)
TGCTAGCTACTCATTTACTCATTCG
LOC_Os03g32570
OsAffx.25341.1.S1_at--619--4851Chr03:18579577..18579601 (25 bp)
GCTACTCATTTACTCATTCGCCATA
LOC_Os03g32570
OsAffx.25341.1.S1_at--715--10631Chr03:18579561..18579585 (25 bp)
TTCGCCATACCCAAACAAAGAGCAT
LOC_Os03g32570
OsAffx.25341.1.S1_at--552--5931Chr03:18579542..18579566 (25 bp)
GAGCATAGCTCTGATCCAGCATTAT
LOC_Os03g32570
OsAffx.25341.1.S1_at--674--4811Chr03:18579535..18579559 (25 bp)
GCTCTGATCCAGCATTATTTATCTT
LOC_Os03g32570
OsAffx.25341.1.S1_at--825--1531Chr03:18579525..18579549 (25 bp)
AGCATTATTTATCTTGAGGTACCTA
LOC_Os03g32570
OsAffx.25341.1.S1_at--318--6151Chr03:18579510..18579534 (25 bp)
GAGGTACCTATACCACCGATCTAAA
LOC_Os03g32570
OsAffx.25341.1.S1_at--534--1771Chr03:18579496..18579520 (25 bp)
ACCGATCTAAATCCGGCCGTTCATC
LOC_Os03g32570
OsAffx.25341.1.S1_at--121--1871Chr03:18579275..18579299 (25 bp)
ACGAGGTGGATGTGGTGGCTCCGGA
LOC_Os03g32570
Target Sequence 
AGACACCACATTCACCAGCTGCATGCTAGCTACTCATTTACTCATTCGCCATACCCAAACAAAGAGCATAGCTCTGATCC
AGCATTATTTATCTTGAGGTACCTATACCACCGATCTAAATCCGGCCGTTCATCTATCGGGGGTGCAAGGGAAACGGAGG
TGTTGAATGCTAGGGATGGCGGTAAAGTTGGGTGCTTGACGAGGTGGATGTGGTGGCTCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis