Browse Element(s) Details


Os.50306.1.S1_at

Description gb:AK120635.1
DB_XREF= gi:37990258
TID=Os.50306.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153J11, full insert sequence.
FL= gb:AK120635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2375411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified
LOC_Os08g23780Os.13608.1.S1_at11/118+14265084..14270229Glycosyltransferase QUASIMODO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50306.1.S1_at--633--7091Chr08:14240050..14240074 (25 bp)
GTCACCTGCGGGTAGCGCCGGATTT
LOC_Os08g23754
Os.50306.1.S1_at--816--10171Chr08:14240006..14240030 (25 bp)
TATTTTCGCAGGTGGGTCGCGGACC
LOC_Os08g23754
Os.50306.1.S1_at--766--3311Chr08:14239958..14239982 (25 bp)
CACAGGCAATTGGATAGCGGCGGTT
LOC_Os08g23754
Os.50306.1.S1_at--394--4211Chr08:14239926..14239950 (25 bp)
CCGCCTGCGATAACTGTTTTTGACT
LOC_Os08g23754
Os.50306.1.S1_at--550--10271Chr08:14239908..14239932 (25 bp)
TTTGACTGCCTCTAAAAACTATTTT
LOC_Os08g23754
Os.50306.1.S1_at--304--10391Chr08:14239886..14239910 (25 bp)
TTTTCTAGTAGTGTGCGCTACATAA
LOC_Os08g23754
Os.50306.1.S1_at--166--2091Chr08:14239867..14239891 (25 bp)
ACATAAAATACTGTGCGAGGCTGCA
LOC_Os08g23754
Os.50306.1.S1_at--936--4491Chr08:14239819..14239843 (25 bp)
GCCGAACAGGCCCAGTATTACTTTA
LOC_Os08g23754
Os.50306.1.S1_at--449--131Chr08:14239803..14239827 (25 bp)
ATTACTTTAGTATAACACCTGGAGA
LOC_Os08g23754
Os.50306.1.S1_at--967--6751Chr08:14239765..14239789 (25 bp)
GTTCACAACTATACACATGGATGCT
LOC_Os08g23754
Os.50306.1.S1_at--1008--9851Chr08:14239754..14239778 (25 bp)
TACACATGGATGCTCTTTTTAATGA
LOC_Os08g23754
Target Sequence 
GTCACCTGCGGGTAGCGCCGGATTTTTTTTTTTGTTCCCTAAAATTATTTTCGCAGGTGGGTCGCGGACCCGCCTGCAAA
AATCACCTATTTTCACAGGCAATTGGATAGCGGCGGTTGTCTCCCCCGCCTGCGATAACTGTTTTTGACTGCCTCTAAAA
ACTATTTTTCTAGTAGTGTGCGCTACATAAAATACTGTGCGAGGCTGCAGCATCGTAGCCCCCTGTAGTGCAGCCGAACA
GGCCCAGTATTACTTTAGTATAACACCTGGAGATACAATAAATGGTGTTCACAACTATACACATGGATGCTCTTTTTAAT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis