Browse Element(s) Details


Os.50335.1.S1_at

Description gb:AK120774.1
DB_XREF= gi:37990397
TID=Os.50335.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 26542 myosin-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008O03, full insert sequence.
FL= gb:AK069690.1 gb:AK120774.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2935011/11myosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29320OsAffx.25367.1.S1_at2/116+16745314..16750068retrotransposon, putative, centromere-specific
LOC_Os06g29330Os.40855.2.S1_x_at6/116+16756583..16757485hypothetical protein
LOC_Os06g29330Os.40855.4.S1_x_at4/116+16756583..16757485hypothetical protein
LOC_Os06g29330Os.40855.4.S1_at1/116+16756583..16757485hypothetical protein
LOC_Os06g29340OsAffx.4960.1.S1_at10/116+16763030..16769687Protein kinase domain containing protein, expressed
LOC_Os06g29350Os.50335.1.S1_at11/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_at6/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350OsAffx.7882.1.S1_x_at3/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29350Os.50543.1.S1_x_at1/116+16773135..16784412myosin, putative, expressed
LOC_Os06g29360NANA6+16784964..16786115hypothetical protein
LOC_Os06g29370OsAffx.15660.1.S1_at10/116+16790222..16792143hypothetical protein
LOC_Os06g29380Os.22732.1.A1_at11/116+16792654..16798778Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os06g29390OsAffx.15661.1.S1_at11/116+16809193..16809438hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0005777cellular_componentperoxisome
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50335.1.S1_at--839--2071Chr06:16783835..16783859 (25 bp)
ACATTTCTGACATTGAACCACCTCC
LOC_Os06g29350
Os.50335.1.S1_at--1078--911Chr06:16783878..16783902 (25 bp)
AGGCTTTGTATTTCTGTTGCCGCCC
LOC_Os06g29350
Os.50335.1.S1_at--153--2431Chr06:16783946..16783970 (25 bp)
AAAAGCATTGCCTCAGCCAGATAAT
LOC_Os06g29350
Os.50335.1.S1_at--496--7751Chr06:16783992..16784016 (25 bp)
GGTGTTACGAGTTACTATTGCCCAA
LOC_Os06g29350
Os.50335.1.S1_at--551--10211Chr06:16784007..16784031 (25 bp)
TATTGCCCAATTAGCGAGATACGGA
LOC_Os06g29350
Os.50335.1.S1_at--690--1931Chr06:16784027..16784051 (25 bp)
ACGGAGATTCCTCGTTTGCAATATT
LOC_Os06g29350
Os.50335.1.S1_at--453--671Chr06:16784088..16784112 (25 bp)
ATGAAACCTGGCATGCCTAGACCCA
LOC_Os06g29350
Os.50335.1.S1_at--799--10031Chr06:16784105..16784129 (25 bp)
TAGACCCAGCTTCTATGCCTTGGGT
LOC_Os06g29350
Os.50335.1.S1_at--816--5691Chr06:16784256..16784280 (25 bp)
GACTTAGTTCTAGAGCCTTTTTGAG
LOC_Os06g29350
Os.50335.1.S1_at--844--10371Chr06:16784323..16784347 (25 bp)
TTTTCCTCTTCCAGTCATTGGGTTA
LOC_Os06g29350
Os.50335.1.S1_at--958--10811Chr06:16784340..16784364 (25 bp)
TTGGGTTACCTACGTTGTACTGATC
LOC_Os06g29350
Target Sequence 
ACATTTCTGACATTGAACCACCTCCGCTCATTCGAGAGAACTCAGGCTTTGTATTTCTGTTGCCGCCCCCTGAATAAATA
GATGGCATAAACAATGCAAGACTTGGTTATGAAAAGCATTGCCTCAGCCAGATAATTGGACAGCTTATGCAAAGTGAGGT
GTTACGAGTTACTATTGCCCAATTAGCGAGATACGGAGATTCCTCGTTTGCAATATTACTGATACAGGTCGATGTAAGCA
AATGCGGCAAAATATGAAACCTGGCATGCCTAGACCCAGCTTCTATGCCTTGGGTTTTTTTATCCCCTCCTATATTTTTA
TTTATTCTTTAAAGTCCAGAATGGTTAGACATTAGTTCATATCAAACTAGTTTAGAAAATTTTAGCAGAATCAGCGAAGA
TTCATTTGTTTCTAGGTTATTGACTTAGTTCTAGAGCCTTTTTGAGGTTTGCAAGAGATGTGCAAATTGCAAATAGGATT
TTTTTTTCTTTTCCTCTTCCAGTCATTGGGTTACCTACGTTGTACTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis