Browse Element(s) Details


Os.5037.1.S1_s_at

Description gb:AU184051
DB_XREF= gi:14191840
DB_XREF=AU184051
CLONE=R0607
TID=Os.5037.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5037 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1601011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15960OsAffx.19699.1.S1_at11/1112+9095141..9097127hypothetical protein
LOC_Os12g15960OsAffx.25317.1.S1_at1/1112+9095141..9097127hypothetical protein
LOC_Os12g15980Os.43203.1.S1_x_at5/1112+9101375..9104610hypothetical protein
LOC_Os12g15990OsAffx.22896.1.S1_x_at1/1112+9107283..9108870retrotransposon protein, putative, unclassified
LOC_Os12g16000OsAffx.9815.1.S1_at11/1112+9111404..9116943transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16010OsAffx.31756.4.S1_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.5037.1.S1_s_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.4.S1_x_at11/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010Os.52455.1.S1_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16010OsAffx.31756.5.S1_x_at1/1112+9121534..9123982oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g16020OsAffx.31757.2.S1_at11/1112+9125043..9125719hypothetical protein
LOC_Os12g16020OsAffx.31757.1.S1_at1/1112+9125043..9125719hypothetical protein
LOC_Os12g16030Os.45173.1.S1_x_at1/1112+9129718..9133627retrotransposon protein, putative, unclassified
LOC_Os12g16040Os.45173.1.S1_x_at2/1112+9135510..9138669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g16040OsAffx.20877.1.S1_at1/1112+9135510..9138669retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g16050NANA12+9138936..9143264retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5037.1.S1_s_at--594--5811Chr12:9121705..9121729 (25 bp)
GACGCCGGCTACTCGGTGCACAAAG
LOC_Os12g16010
Os.5037.1.S1_s_at--245--4851Chr12:9121698..9121722 (25 bp)
GCTACTCGGTGCACAAAGGAGCGGA
LOC_Os12g16010
Os.5037.1.S1_s_at--146--7351Chr12:9121690..9121714 (25 bp)
GTGCACAAAGGAGCGGAGAACTCGC
LOC_Os12g16010
Os.5037.1.S1_s_at--686--9331Chr12:9121669..9121693 (25 bp)
TCGCCGGCGCGTTGAACATGGCTAG
LOC_Os12g16010
Os.5037.1.S1_s_at--949--8391Chr12:9121664..9121688 (25 bp)
GGCGCGTTGAACATGGCTAGTAGCT
LOC_Os12g16010
Os.5037.1.S1_s_at--251--5491Chr12:9121656..9121680 (25 bp)
GAACATGGCTAGTAGCTGGTGCCAT
LOC_Os12g16010
Os.5037.1.S1_s_at--503--8751Chr12:9121628..9121652 (25 bp)
TGTATGCATGCATGTGCCTTTGTCA
LOC_Os12g16010
Os.5037.1.S1_s_at--758--8691Chr12:9121616..9121640 (25 bp)
TGTGCCTTTGTCAGCGCCGTAATAA
LOC_Os12g16010
Os.5037.1.S1_s_at--1103--1651Chr12:9121604..9121628 (25 bp)
AGCGCCGTAATAATTCTGTTATTGA
LOC_Os12g16010
Os.5037.1.S1_s_at--863--3151Chr12:9121593..9121617 (25 bp)
AATTCTGTTATTGACGTTCTTGAAA
LOC_Os12g16010
Os.5037.1.S1_s_at--95--711Chr12:9121563..9121587 (25 bp)
ATGATGTGGCTGTGCAGTGACGCGA
LOC_Os12g16010
Target Sequence 
GACGCCGGCTACTCGGTGCACAAAGGAGCGGAGAACTCGCCGGCGCGTTGAACATGGCTAGTAGCTGGTGCCATGCATGT
ATGCATGCATGTGCCTTTGTCAGCGCCGTAATAATTCTGTTATTGACGTTCTTGAAATAAAGATGATGTGGCTGTGCAGT
GACGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5037.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis