Browse Element(s) Details


Os.50388.1.S1_at

Description gb:AK120993.1
DB_XREF= gi:37990616
TID=Os.50388.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043O03, full insert sequence.
FL= gb:AK120993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34750NANA11+19858647..19867617ABC1 family protein
LOC_Os11g34760NANA11+19868161..19870914expressed protein
LOC_Os11g34770Os.27616.1.S1_at1/1111+19871478..19874813Maf-like protein, expressed
LOC_Os11g34780NANA11+19876545..19876940hypothetical protein
LOC_Os11g34790Os.12149.1.S1_at11/1111+19880616..19884240expressed protein
LOC_Os11g34800Os.50388.1.S1_at11/1111+19884987..19887686expressed protein
LOC_Os11g34800OsAffx.12918.1.S1_s_at11/1111+19884987..19887686expressed protein
LOC_Os11g34810Os.10981.1.S1_at10/1111+19888990..19890956expressed protein
LOC_Os11g34820Os.9098.1.S1_at11/1111+19895836..19904170Zinc knuckle family protein, expressed
LOC_Os11g34830NANA11+19906539..19913611ABC1 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50388.1.S1_at--32--7851Chr11:19885465..19885489 (25 bp)
GGTACTTATACTAGCATAGAAACTT
LOC_Os11g34800
Os.50388.1.S1_at--49--10231Chr11:19885354..19885455 (25 bp)
TATTGATTTTTGAGCAGGACCACTG
LOC_Os11g34800
Os.50388.1.S1_at--41--1531Chr11:19885342..19885366 (25 bp)
AGCAGGACCACTGGATGTGTTTCGT
LOC_Os11g34800
Os.50388.1.S1_at--291--6271Chr11:19885329..19885353 (25 bp)
GATGTGTTTCGTGTGGACTCCGGCC
LOC_Os11g34800
Os.50388.1.S1_at--563--3771Chr11:19885263..19885287 (25 bp)
CTCTCTGGCGGCAGAAACAGCTCAG
LOC_Os11g34800
Os.50388.1.S1_at--548--8331Chr11:19885201..19885225 (25 bp)
GGCTGCACGCGTCTACAAGTTATGA
LOC_Os11g34800
Os.50388.1.S1_at--343--3211Chr11:19885186..19885210 (25 bp)
CAAGTTATGAAATGGCCGTATCTTT
LOC_Os11g34800
Os.50388.1.S1_at--419--251Chr11:19885122..19885146 (25 bp)
ATATCATTTTCATGCTAATTAGAGT
LOC_Os11g34800
Os.50388.1.S1_at--880--7331Chr11:19885037..19885061 (25 bp)
GTGCAACATGTAGGCGAGGTATCGT
LOC_Os11g34800
Os.50388.1.S1_at--41--751Chr11:19885030..19885054 (25 bp)
ATGTAGGCGAGGTATCGTGAGTCTT
LOC_Os11g34800
Os.50388.1.S1_at--86--4011Chr11:19885015..19885039 (25 bp)
CGTGAGTCTTGTGGTAGATACATAT
LOC_Os11g34800
Target Sequence 
GGTACTTATACTAGCATAGAAACTTATGTAAATATATTGATTTTTGAGCAGGACCACTGGATGTGTTTCGTGTGGACTCC
GGCCCCACGCTCGCCCTCCCTCCTGCACTTTCCTCTCCTCCTCTCCTCTCTGGCGGCAGAAACAGCTCAGGATGGCGCGG
CTCGAGGCGACGACAGTAGAGCGGTGGGGCTGCACGCGTCTACAAGTTATGAAATGGCCGTATCTTTTTTTAAGGAAAGC
AAGAAAGGTCCATTCAAAGAAACAAAATATCATTTTCATGCTAATTAGAGTTTATGTTTTTGGGGAGTTTAATTATTTAT
TTTCAATAGCAATGTTAAATCATAGTTGGATGTGCAACATGTAGGCGAGGTATCGTGAGTCTTGTGGTAGATACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis