Browse Element(s) Details


Os.50407.1.S1_at

Description gb:AK121084.1
DB_XREF= gi:37990707
TID=Os.50407.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063M01, full insert sequence.
FL= gb:AK121084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6092010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60880Os.35344.3.S1_x_at11/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880Os.35344.18.S1_x_at9/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.2.S1_s_at8/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.3.S1_x_at5/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.5.S1_x_at4/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.1.S1_s_at2/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60890OsAffx.21772.1.S1_s_at11/111+35545907..35546374hypothetical protein
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein
LOC_Os01g60960Os.42531.1.S1_at11/111+35584410..35585972LOB domain protein 13, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50407.1.S1_at--99--7691Chr01:35567207..35567231 (25 bp)
GGGTATCCAACCATTCATTGAAGAG
LOC_Os01g60920
Os.50407.1.S1_at--739--8991Chr01:35567225..35567249 (25 bp)
TGAAGAGTCTTTTCTGTGCACACCT
LOC_Os01g60920
Os.50407.1.S1_at--273--8291Chr01:35567317..35567341 (25 bp)
GGCATATTGCCTTACTGTCATTCAG
LOC_Os01g60920
Os.50407.1.S1_at--793--6491Chr01:35567373..35567397 (25 bp)
GATAGCTTGTATCGCTGAGCTTCTC
LOC_Os01g60920
Os.50407.1.S1_at--1051--6731Chr01:35567400..35567424 (25 bp)
GTTCTTGTAATTTATCTGCTGTCGG
LOC_Os01g60920
Os.50407.1.S1_at--1123--10491Chr01:35567438..35567462 (25 bp)
TTAAGAGTCCATTAATCGTCACTGG
LOC_Os01g60920
Os.50407.1.S1_at--709--8531Chr01:35567460..35567484 (25 bp)
TGGACCTACATCAACACTCAGTAAG
LOC_Os01g60920
Os.50407.1.S1_at--563--7011Chr01:35567498..35567522 (25 bp)
GTACTAATTACAGAGCACGGTGCAT
LOC_Os01g60920
Os.50407.1.S1_at--1132--9931Chr01:35567528..35567552 (25 bp)
TACGATTTGCGAGAGCTTCTGCTGT
LOC_Os01g60920
Os.50407.1.S1_at--587--9051NONE
TGCAGTGCCAGATGTTCCAAACCAG
NONE
Os.50407.1.S1_at--788--171Chr01:35567611..35567635 (25 bp)
ATTTTATGTGTGTTACTCCCCTGTC
LOC_Os01g60920
Target Sequence 
GGGTATCCAACCATTCATTGAAGAGTCTTTTCTGTGCACACCTTGGATGGGAGAGTTCCCAAAGGACATTAATTAAGATC
TCATCTTGAAGATTACTACACAATGAATATGGCATATTGCCTTACTGTCATTCAGGACAAGTATCTCAAGCCATGAAGTA
TCTTTTGATAGCTTGTATCGCTGAGCTTCTCGAGTTCTTGTAATTTATCTGCTGTCGGAATATTATGCAAGTTAAGAGTC
CATTAATCGTCACTGGACCTACATCAACACTCAGTAAGGAGTCATTAGATGGTACTAATTACAGAGCACGGTGCATGGTG
TTACGATTTGCGAGAGCTTCTGCTGTGTGCAATGCTATATGCTTTCTGTAATGCAGTGCCAGATGTTCCAAACCAGTTAT
GTTTATTTTATGTGTGTTACTCCCCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis