Browse Element(s) Details


Os.50421.1.S1_at

Description gb:AK121143.1
DB_XREF= gi:37990766
TID=Os.50421.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077P14, full insert sequence.
FL= gb:AK121143.1 gb:AK072784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5399011/11cyclin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53950OsAffx.24859.1.S1_at11/112+33028536..33029978hypothetical protein
LOC_Os02g53960OsAffx.30039.2.S1_s_at11/112+33031809..33032894hypothetical protein
LOC_Os02g53970Os.9651.1.S1_at11/112+33039522..33042134PA domain containing protein, expressed
LOC_Os02g53979NANA2+33042730..33042927NA
LOC_Os02g53990Os.50421.1.S1_at11/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g53990Os.4183.1.S1_a_at2/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g54000Os.10219.1.S1_at11/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54000Os.50124.1.S1_at1/112+33067266..33071309mRNA capping enzyme family protein, putative, expressed
LOC_Os02g54010Os.14769.1.S1_at11/112+33072442..33077687lipase class 3 family protein, putative, expressed
LOC_Os02g54020OsAffx.24860.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020OsAffx.3060.1.S1_at11/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os02g54020Os.50833.1.S1_at1/112+33078576..33087384ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50421.1.S1_at--830--3531Chr02:33060239..33060263 (25 bp)
CATGCCTTCATGTATCCTTGTTATG
LOC_Os02g53990
Os.50421.1.S1_at--304--371Chr02:33060273..33060297 (25 bp)
ATAATTGTTTGTATCTGGGCTCCCC
LOC_Os02g53990
Os.50421.1.S1_at--943--7091Chr02:33060305..33060329 (25 bp)
GTCACGTGTTGATTCGTACATGGCA
LOC_Os02g53990
Os.50421.1.S1_at--669--1171Chr02:33060329..33060353 (25 bp)
AGTAAGTTCATCTGCTCAATCGGGC
LOC_Os02g53990
Os.50421.1.S1_at--390--7611Chr02:33060350..33060374 (25 bp)
GGGCAACCCTTCTTACTCATGAGAA
LOC_Os02g53990
Os.50421.1.S1_at--605--3091Chr02:33060411..33060435 (25 bp)
AATACTGTCAGCTCCAACAATGGCC
LOC_Os02g53990
Os.50421.1.S1_at--1143--8451Chr02:33060431..33060455 (25 bp)
TGGCCTTCTTCGTCTGCAGGGTACA
LOC_Os02g53990
Os.50421.1.S1_at--752--5011Chr02:33060446..33060470 (25 bp)
GCAGGGTACAGCCTATGCATTCGCT
LOC_Os02g53990
Os.50421.1.S1_at--36--651Chr02:33060460..33060484 (25 bp)
ATGCATTCGCTGTTGTTGACACAAG
LOC_Os02g53990
Os.50421.1.S1_at--211--2171Chr02:33060485..33060509 (25 bp)
ACACTGTACAGGCTACAACGCGCAG
LOC_Os02g53990
Os.50421.1.S1_at--504--5051Chr02:33060525..33060549 (25 bp)
GCAGCAGAACGAGCCCAAATATTGA
LOC_Os02g53990
Target Sequence 
CATGCCTTCATGTATCCTTGTTATGCAAGATAAGATAATTGTTTGTATCTGGGCTCCCCGTTTTGTGTCACGTGTTGATT
CGTACATGGCAGTAAGTTCATCTGCTCAATCGGGCAACCCTTCTTACTCATGAGAAGGAATATCAATTTTGGTGATTCTG
TGGAAGGAATGAAATACTGTCAGCTCCAACAATGGCCTTCTTCGTCTGCAGGGTACAGCCTATGCATTCGCTGTTGTTGA
CACAAGACACTGTACAGGCTACAACGCGCAGCCAGCCATGGGGAATGCAGCAGAACGAGCCCAAATATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis