Browse Element(s) Details


Os.50452.2.S1_x_at

Description gb:AK072608.1
DB_XREF= gi:32982631
TID=Os.50452.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134K04, full insert sequence.
FL= gb:AK072608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2313011/11Oligopeptide transporter 5, putative, expressed
LOC_Os08g384001/11Oligopeptide transporter 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23100Os.55409.1.S1_at10/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23100OsAffx.15945.1.S1_at1/118+13780107..13786943cyclase family protein, putative, expressed
LOC_Os08g23110Os.33205.1.S1_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23110Os.33205.1.S1_x_at11/118+13787131..13792601tRNA synthetases class I family protein, expressed
LOC_Os08g23120Os.9869.1.S1_at11/118+13797608..13801838RNA recognition motif family protein, expressed
LOC_Os08g23130Os.50452.2.S1_x_at11/118+13804750..13809222Oligopeptide transporter 5, putative, expressed
LOC_Os08g23140Os.14494.1.S1_at11/118+13810994..13817843expressed protein
LOC_Os08g23140Os.53108.1.S1_at1/118+13810994..13817843expressed protein
LOC_Os08g23150Os.17629.1.A1_at11/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23150OsAffx.21707.1.S1_at1/118+13821689..13825571Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os08g23160Os.33704.3.S1_x_at5/118+13834051..13839223hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50452.2.S1_x_at--72--8091Chr08:13805272..13805296 (25 bp)
GGACCGCTCCGGATGTTTGGCCGTC
LOC_Os08g23130
Os.50452.2.S1_x_at--1097--8411Chr08:13805254..13805278 (25 bp)
GGCCGTCTCGGCAACTACTGGCAGA
LOC_Os08g23130
Os.50452.2.S1_x_at--673--3912Chr08:24181330..24181349 (20 bp)
CTGGCAGATGAACTACTTCTTCCTC
LOC_Os08g38400
Os.50452.2.S1_x_at--876--5071Chr08:13805160..13805184 (25 bp)
GCAGCGCGTTGCTCCGGGACATCAA
LOC_Os08g23130
Os.50452.2.S1_x_at--657--1031Chr08:13805092..13805116 (25 bp)
AGGTCCGTCAACTTCGTCATGTGGG
LOC_Os08g23130
Os.50452.2.S1_x_at--42--7911Chr08:13805058..13805082 (25 bp)
GGTTCGTGTTCAACCACGTCGTGTA
LOC_Os08g23130
Os.50452.2.S1_x_at--1059--7491Chr08:13805015..13805039 (25 bp)
GTGGATGCGGCATAACTACGTGCTC
LOC_Os08g23130
Os.50452.2.S1_x_at--1126--9391Chr08:13804944..13804968 (25 bp)
TCGTCTCGCTAGGATACTTCGACAT
LOC_Os08g23130
Os.50452.2.S1_x_at--37--6991Chr08:13804822..13804846 (25 bp)
GTACCTTCTTGATTGATCAGGACAC
LOC_Os08g23130
Os.50452.2.S1_x_at--1050--391Chr08:13804807..13804831 (25 bp)
ATCAGGACACCGCATCTACATGTAT
LOC_Os08g23130
Os.50452.2.S1_x_at--756--10191Chr08:13804751..13804775 (25 bp)
TATATATTATATCCTCTTGTCTTCC
LOC_Os08g23130
Target Sequence 
GGACCGCTCCGGATGTTTGGCCGTCTCGGCAACTACTGGCAGATGAACTACTTCTTCCTCGTCGGCGTCCTCGCGCCGGT
GCCCGTCTGGCTGCTGTCGCGCCGGTACCCGCGCAGCGCGTTGCTCCGGGACATCAACCTGCCGCTCGTCCTCGCCGGCG
CCAGCGGGCTGCTCCCGGCGAGGTCCGTCAACTTCGTCATGTGGGGGCTCGTCGGGTTCGTGTTCAACCACGTCGTGTAC
CGCCGGTGCAGGGCGTGGTGGATGCGGCATAACTACGTGCTCGCCGCGGGGCTCGACGCCGGCGTCGCCTTCATGGGCGT
GCTCACCTTCGTCTCGCTAGGATACTTCGACATATACGGGGTGCAGTGGTGGGGTGGCGCCGCCGATGATCACTGCCCCT
TGGCGTCGTGCCCCACAGCACCTGGGGTGTTTGCCAGGGGATGCCCGCCTGTACCTTCTTGATTGATCAGGACACCGCAT
CTACATGTATATACTCCATATGACAGATGGTTACTCAAATGTATATATTATATCCTCTTGTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50452.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis