Browse Element(s) Details


Os.50478.1.S1_at

Description gb:AK121364.1
DB_XREF= gi:37990987
TID=Os.50478.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023125D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023125D04, full insert sequence.
FL= gb:AK121364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2535011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25310Os.7310.1.S1_at11/115+14610167..14623239AMP-binding enzyme family protein, expressed
LOC_Os05g25320Os.50190.1.S1_at10/115+14624020..14626949transposon protein, putative, unclassified, expressed
LOC_Os05g25330NANA5+14629613..14634041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25340OsAffx.14823.1.S1_at11/115+14636415..14637182hypothetical protein
LOC_Os05g25350Os.50478.1.S1_at11/115+14638522..14643549Protein kinase domain containing protein, expressed
LOC_Os05g25360OsAffx.14824.1.S1_at11/115+14644792..14645392hypothetical protein
LOC_Os05g25360Os.49549.1.S1_at1/115+14644792..14645392hypothetical protein
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25380NANA5+14664034..14665794Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50478.1.S1_at--800--2271Chr05:14643056..14643080 (25 bp)
AAATCGCTCCTGATTGCCTCAAGAA
LOC_Os05g25350
Os.50478.1.S1_at--732--511Chr05:14643113..14643137 (25 bp)
ATCGAAGCATCGACAGGCCAGAGAT
LOC_Os05g25350
Os.50478.1.S1_at--557--6251Chr05:14643135..14643159 (25 bp)
GATGGGTGATGTTCTTCGGAACCTA
LOC_Os05g25350
Os.50478.1.S1_at--175--1411Chr05:14643230..14643254 (25 bp)
AGACAACACCAGACATGATGACCAT
LOC_Os05g25350
Os.50478.1.S1_at--899--2451Chr05:14643269..14643293 (25 bp)
AACAATCCACCTACTCGACAATGAG
LOC_Os05g25350
Os.50478.1.S1_at--245--8151Chr05:14643301..14643325 (25 bp)
GGACAAAGGACCATATTCTCTGATA
LOC_Os05g25350
Os.50478.1.S1_at--398--8831Chr05:14643321..14643345 (25 bp)
TGATATGATGGATCCGCAGGCCCGA
LOC_Os05g25350
Os.50478.1.S1_at--1029--4991Chr05:14643336..14643360 (25 bp)
GCAGGCCCGATGAAACACAACAGTT
LOC_Os05g25350
Os.50478.1.S1_at--78--9651Chr05:14643377..14643401 (25 bp)
TCAGATCCATAGTTCATGTCCTGGT
LOC_Os05g25350
Os.50478.1.S1_at--190--9631Chr05:14643390..14643414 (25 bp)
TCATGTCCTGGTGATCTTTTGATCG
LOC_Os05g25350
Os.50478.1.S1_at--401--6391Chr05:14643410..14643434 (25 bp)
GATCGCAATCACTCTAGTATGTTGA
LOC_Os05g25350
Target Sequence 
AAATCGCTCCTGATTGCCTCAAGAAGTTTGCTGATTGTGCAGAACAATGTGTTGCTGATCGAAGCATCGACAGGCCAGAG
ATGGGTGATGTTCTTCGGAACCTAGAGGTTGCTCTGAAGATGCAGGAGTGTGCAGAGAACAATAGCAAATTCAGTGAAGA
AACAACATCGTCGAAGACAACACCAGACATGATGACCATCATGGATACTGACAAACAATCCACCTACTCGACAATGAGCA
TCACTGGACAAAGGACCATATTCTCTGATATGATGGATCCGCAGGCCCGATGAAACACAACAGTTAATGTTTCAACTAAT
TTCAGATCCATAGTTCATGTCCTGGTGATCTTTTGATCGCAATCACTCTAGTATGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis