Browse Element(s) Details


Os.50521.1.S1_at

Description gb:AK121598.1
DB_XREF= gi:37991221
TID=Os.50521.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039M08, full insert sequence.
FL= gb:AK121598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0398411/11
LOC_Os01g519042/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03940NANA5+1744708..1748981transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.14491.2.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03950Os.47463.1.S1_x_at3/115+1751984..1755684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g03960NANA5+1759685..1760400hypothetical protein
LOC_Os05g03972Os.52089.1.S1_at11/115+1763167..1769307expressed protein
LOC_Os05g03984Os.50521.1.S1_at11/115+1771516..1772542NA
LOC_Os05g04000Os.48986.1.S1_s_at1/115+1774104..1774587hypothetical protein
LOC_Os05g04010NANA5+1777706..1778200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g04020OsAffx.14532.1.S1_at11/115+1782207..1789120expressed protein
LOC_Os05g04030Os.28943.1.S1_x_at1/115+1792305..1795440retrotransposon protein, putative, unclassified
LOC_Os05g04040NANA5+1796062..1802013retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50521.1.S1_at--67--7891Chr05:1772357..1772381 (25 bp)
GGTTCTTGCCCAAACCTAGTCGCCG
LOC_Os05g03984
Os.50521.1.S1_at--1132--5412Chr02:33845403..33845427 (25 bp)
GAAGCCGCCGATTGCCAGTTCTGTT
NONE
Os.50521.1.S1_at--1147--10551Chr05:1772289..1772313 (25 bp)
TTCTTCTTGGCGACGGGTTGCCTAG
LOC_Os05g03984
Os.50521.1.S1_at--1146--4191Chr05:1772246..1772270 (25 bp)
CCCGAGACCCTGACATAGGCATTGA
LOC_Os05g03984
Os.50521.1.S1_at--176--1531Chr05:1772180..1772204 (25 bp)
AGCTTTCCTGGCCACGAGTTCGTAC
LOC_Os05g03984
Os.50521.1.S1_at--207--6073Chr09:15884277..15884301 (25 bp)
GAGTTCGTACGCCTGCCTAGCTTTG
NONE
Os.50521.1.S1_at--622--6194Chr09:15884332..15884352 (21 bp)
GAGGAAGAAGACGTGCTAGCTAGCT
NONE
Os.50521.1.S1_at--932--9391Chr05:1772068..1772092 (25 bp)
TCGTCTTCTTTCCTGGCAATGGGCA
LOC_Os05g03984
Os.50521.1.S1_at--188--991Chr05:1772044..1772068 (25 bp)
AGGAGTATGCGCATTGCTGCTCGTC
LOC_Os05g03984
Os.50521.1.S1_at--577--9031Chr05:1772019..1772043 (25 bp)
TGCACTGCTCTGCTAGCACGTCTTC
LOC_Os05g03984
Os.50521.1.S1_at--1030--8031Chr05:1771822..1771846 (25 bp)
GGAGTATGACAGGTGTGTTCCATAT
LOC_Os05g03984
Target Sequence 
GGTTCTTGCCCAAACCTAGTCGCCGCCGCCGCCGTGGCCGAAGCCGCCGATTGCCAGTTCTGTTCTGTTTCTTCTTGGCG
ACGGGTTGCCTAGCGGCCCATGTGCAGCCGGCCCGAGACCCTGACATAGGCATTGATGATGGACGGCAGGCTGGCCCCTG
CACGGCGCGACGCCGGCAGCTTTCCTGGCCACGAGTTCGTACGCCTGCCTAGCTTTGCCGGCTGCCTCGTTGGGCCGTGG
CGGAGGAAGAAGACGTGCTAGCTAGCTAGCTCGCCTACACACGCCGTCGTCGTCTTCTTTCCTGGCAATGGGCAGGAGTA
TGCGCATTGCTGCTCGTCTGCACTGCTCTGCTAGCACGTCTTCTTCCTCCGCCGCCGCCACCTCCGCCTCCGTCTTCGTG
TCCCGCGCCGCCGCCTGCACCAGCCTCCATCCGTCCGCGCGCCGAGGGGCGGCTCCTTGTAGTGGCCACGGCCGCCGCCG
CTCGGCGTCGCTCGCCGCCGTCGACCGGCGAGAAAGAGAGAGGAAGAGTGAGAGAGGAGTATGACAGGTGTGTTCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis