Browse Element(s) Details


Os.50531.1.S1_at

Description gb:AK121644.1
DB_XREF= gi:37991267
TID=Os.50531.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057B05, full insert sequence.
FL= gb:AK121644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3007011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein
LOC_Os09g30040NANA9+18271767..18271991expressed protein
LOC_Os09g30050NANA9+18274149..18274718expressed protein
LOC_Os09g30060Os.50081.1.S1_x_at1/119+18277828..18278633hypothetical protein
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein
LOC_Os09g30079NANA9+18288914..18289163NA
LOC_Os09g30090OsAffx.6447.1.S1_at11/119+18289711..18291042hypothetical protein
LOC_Os09g30100NANA9+18292045..18310988NOL1/NOP2/sun family protein, putative, expressed
LOC_Os09g30120Os.6165.1.S1_a_at11/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.30088.2.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.23056.1.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50531.1.S1_at--1047--8631Chr09:18285123..18285147 (25 bp)
TGGGCTCTATTCCTGAACTAGAATG
LOC_Os09g30070
Os.50531.1.S1_at--665--7951Chr09:18285209..18285233 (25 bp)
GGATCTGCTGGTTTGAGTTACTCGC
LOC_Os09g30070
Os.50531.1.S1_at--818--1211Chr09:18285224..18285248 (25 bp)
AGTTACTCGCATCAGTTGCCATCTG
LOC_Os09g30070
Os.50531.1.S1_at--442--2351Chr09:18285254..18285278 (25 bp)
AAAGCACTTCAGGATATCACTGGAT
LOC_Os09g30070
Os.50531.1.S1_at--812--2471Chr09:18285287..18285311 (25 bp)
AACACTGTAAATTCTGCCTCTCTTT
LOC_Os09g30070
Os.50531.1.S1_at--849--4291Chr09:18285303..18285327 (25 bp)
CCTCTCTTTCCTCAATATTCTTGGA
LOC_Os09g30070
Os.50531.1.S1_at--789--2971Chr09:18285365..18285389 (25 bp)
AATGGTCATGCCAACGATAAGCCAA
LOC_Os09g30070
Os.50531.1.S1_at--386--2411Chr09:18285389..18285413 (25 bp)
AAAAACAGTCTTGCTGCTTCAACCA
LOC_Os09g30070
Os.50531.1.S1_at--1158--1231Chr09:18285576..18285599 (24 bp)
AGTTGCAACCTACAACAGCATGTGT
LOC_Os09g30070
Os.50531.1.S1_at--1007--5291Chr09:18285754..18285778 (25 bp)
GAAGGCACTTGAGGCAGCTGAAGCT
LOC_Os09g30070
Os.50531.1.S1_at--73--1611Chr09:18285769..18285793 (25 bp)
AGCTGAAGCTGCAAAACGCCTTGAA
LOC_Os09g30070
Target Sequence 
TGGGCTCTATTCCTGAACTAGAATGCTTCCGAATTGATGAACATAGCAGCATCGCAGAAGAAAATGAATACCAAGGGATG
TTACATGGATCTGCTGGTTTGAGTTACTCGCATCAGTTGCCATCTGGCAGAAAAGCACTTCAGGATATCACTGGATTATG
TCAAAACACTGTAAATTCTGCCTCTCTTTCCTCAATATTCTTGGATACAGGTAATGAGCTCAATCATCAGACAGATCTCA
TAAATGGTCATGCCAACGATAAGCCAAAAAACAGTCTTGCTGCTTCAACCAAGAGAGAGAGAAATATCTGATTCCCTTCA
TCCTAGATTAAGGAGGACAGAACTACATAACAGAAATGGAAGACACCAGAGTGAAGCCAATATTGACAAACAATCTAAGC
CTAGCAATATTGTTGCCAATGTGACATCATTTATACCTCTTGTAAAACCAAAGTTGCAACCTACAACAGCATGTGTGAAA
AAAGATGTCAGAGTGAAGGCACTTGAGGCAGCTGAAGCTGCAAAACGCCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis