Browse Element(s) Details


Os.50548.2.S1_x_at

Description gb:AK060053.1
DB_XREF= gi:32970071
TID=Os.50548.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B01, full insert sequence.
FL= gb:AK060053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1761011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g17570OsAffx.30648.1.S1_at2/119+10745002..10746187hypothetical protein
LOC_Os09g17580OsAffx.6316.1.S1_x_at11/119+10750560..10751144expressed protein
LOC_Os09g17590NANA9+10754334..10755700hypothetical protein
LOC_Os09g17600Os.27354.1.S1_at11/119+10762251..10767262expressed protein
LOC_Os09g17610Os.50548.2.S1_x_at11/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17610OsAffx.29897.1.S1_at10/119+10767865..10769135Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g17620Os.50548.3.S1_at11/119+10769144..10771860expressed protein
LOC_Os09g17630Os.26870.1.S1_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed
LOC_Os09g17630Os.26870.2.A1_x_at9/119+10784209..10792850Receptor-like protein kinase 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50548.2.S1_x_at--443--7791Chr09:10768574..10768598 (25 bp)
GGTCCTTAGACCCTCATAAGATGGT
LOC_Os09g17610
Os.50548.2.S1_x_at--53--1131Chr09:10768633..10768657 (25 bp)
AGTGCAAGATCCAAGCCAGCTCCAA
LOC_Os09g17610
Os.50548.2.S1_x_at--770--731Chr09:10768689..10768713 (25 bp)
ATGTTTGGAGACATTCCTGGCTGGG
LOC_Os09g17610
Os.50548.2.S1_x_at--965--9011Chr09:10768735..10768759 (25 bp)
TGCAACCACATATTTCACCAAGAGT
LOC_Os09g17610
Os.50548.2.S1_x_at--890--10131Chr09:10768814..10768838 (25 bp)
TATGCGAGAGGAACACCGTCTCCGA
LOC_Os09g17610
Os.50548.2.S1_x_at--188--7171Chr09:10768831..10768855 (25 bp)
GTCTCCGACAACAGCCAGAGTGGCG
LOC_Os09g17610
Os.50548.2.S1_x_at--793--8551Chr09:10768904..10768928 (25 bp)
TGGAGGAGATCTTCAGCCGGGTCAC
LOC_Os09g17610
Os.50548.2.S1_x_at--826--7091Chr09:10768924..10768948 (25 bp)
GTCACATTCTCAAACTTCATGCCAT
LOC_Os09g17610
Os.50548.2.S1_x_at--548--411Chr09:10769018..10769042 (25 bp)
ATCATGGTGTGCTACTCACTTGCAT
LOC_Os09g17610
Os.50548.2.S1_x_at--932--9671Chr09:10769033..10769057 (25 bp)
TCACTTGCATGATATTCCACTACGA
LOC_Os09g17610
Os.50548.2.S1_x_at--145--6551Chr09:10769068..10769092 (25 bp)
GATTTTCTACCTGGCAATCTTGTCA
LOC_Os09g17610
Target Sequence 
GGTCCTTAGACCCTCATAAGATGGTTGAATCAAACAGAGGAGGCAGAAACCATGCAAAGAGTGCAAGATCCAAGCCAGCT
CCAAACAACACGGAAGAGGAGAAAGCATGTACCATATGTTTGGAGACATTCCTGGCTGGGGAGCAGGTGGTGGCCACACC
CTGCAACCACATATTTCACCAAGAGTGTATCACCCCCTGGGTGAAGGGGCATGGCAACTGCCCGGTGTGCCGGTTCGCGC
TATGCGAGAGGAACACCGTCTCCGACAACAGCCAGAGTGGCGTTGGAGAGGTTGAGGTAGATCTGGACCTGCTGGAGATG
ATGAGGGCCATGGAGGAGATCTTCAGCCGGGTCACATTCTCAAACTTCATGCCATACAACTAGATGAATCAGCATCAGGT
CATGAAGACATGAACTGATGAACAAATGGTATTCCAGTCTTAATATCATGGTGTGCTACTCACTTGCATGATATTCCACT
ACGAATTTCATCAAGATTTTCTACCTGGCAATCTTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50548.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis