Browse Element(s) Details


Os.50560.1.S1_at

Description gb:AK121842.1
DB_XREF= gi:37991465
TID=Os.50560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101E08, full insert sequence.
FL= gb:AK121842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4513011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45080Os.25345.2.S1_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080Os.25345.1.S1_x_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090Os.46304.1.S1_a_at11/116+27270985..27274167expressed protein
LOC_Os06g45100Os.53365.1.S1_at11/116+27274529..27277847cryptochrome dash, putative, expressed
LOC_Os06g45110Os.17942.1.S1_at11/116+27278953..27283979expressed protein
LOC_Os06g45120Os.11821.1.S2_at11/116+27285311..27291850Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120Os.11821.1.S1_at10/116+27285311..27291850Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130Os.50560.1.S1_at11/116+27293151..27294057hypothetical protein
LOC_Os06g45130OsAffx.28111.1.S1_at11/116+27293151..27294057hypothetical protein
LOC_Os06g45140Os.1503.1.S1_at11/116+27298917..27301107bZIP transcription factor family protein, expressed
LOC_Os06g45150OsAffx.15933.1.S1_s_at11/116+27302502..27303231Pollen allergen family protein, expressed
LOC_Os06g45160Os.22589.1.S1_at11/116+27305729..27306412Pollen allergen family protein, expressed
LOC_Os06g45170NANA6+27308513..27313034retrotransposon protein, putative, unclassified
LOC_Os06g45180NANA6+27315963..27316607Pollen allergen family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50560.1.S1_at--284--2711Chr06:27293278..27293302 (25 bp)
AAGCATTGAAGCTCCGCTGCGAAAT
LOC_Os06g45130
Os.50560.1.S1_at--951--10771Chr06:27293302..27293326 (25 bp)
TTGTATCGCCGATGAAACCGTGGGA
LOC_Os06g45130
Os.50560.1.S1_at--287--2611Chr06:27293317..27293341 (25 bp)
AACCGTGGGATCCTTCGATTTGATT
LOC_Os06g45130
Os.50560.1.S1_at--851--6511Chr06:27293342..27293366 (25 bp)
GATATTGATACACCCTAGTGCCTGC
LOC_Os06g45130
Os.50560.1.S1_at--811--1131Chr06:27293358..27293382 (25 bp)
AGTGCCTGCGAATCTGACTACGGTG
LOC_Os06g45130
Os.50560.1.S1_at--301--6671Chr06:27293396..27293420 (25 bp)
GTTGCTCTATTGCTAGGGCAGGTCT
LOC_Os06g45130
Os.50560.1.S1_at--847--7451Chr06:27293675..27293699 (25 bp)
GTGTCGACCAATAGAACCAGTGCTT
LOC_Os06g45130
Os.50560.1.S1_at--571--10371Chr06:27293701..27293725 (25 bp)
TTTTTTCCCTCTTAGCTACTGATGA
LOC_Os06g45130
Os.50560.1.S1_at--337--8711Chr06:27293727..27293751 (25 bp)
TGTCCAGCTAACTTCTCATCAACAG
LOC_Os06g45130
Os.50560.1.S1_at--1133--2191Chr06:27293778..27293802 (25 bp)
ACAACACATCATTTTTCCCTGGGAA
LOC_Os06g45130
Os.50560.1.S1_at--427--8031Chr06:27293837..27293861 (25 bp)
GGAGTGTTTGTACAGCAGCTCAAGT
LOC_Os06g45130
Target Sequence 
AAGCATTGAAGCTCCGCTGCGAAATTGTATCGCCGATGAAACCGTGGGATCCTTCGATTTGATTGATATTGATACACCCT
AGTGCCTGCGAATCTGACTACGGTGGGAGCTCGTCGTAGTTGCTCTATTGCTAGGGCAGGTCTAATTAGTACTACTAGTA
GTAGTGACACTTAGATTGACTGATTGGGTTTCCTGGGGCTAGTGGCCAAATGGGGGATTTCAATCATCACTGCTTCTTTC
ATTTCATGTAGATTTTTAATGGAAAATTTTTTCCCTCTATATCAAATACTAGACCATATATCCCCTAAAAAAAGTAGACC
ATATATATCCTGACTTTGATATTGCTACTAGACCATATATGTCCTGACTTTGGTATTGGATAGTAGCATTGAATCTAGTG
TCGACCAATAGAACCAGTGCTTTTTTTTTCCCTCTTAGCTACTGATGATTGTCCAGCTAACTTCTCATCAACAGGAGTTA
ACTGAGTTTGGACAACCCTCACAACACATCATTTTTCCCTGGGAATACGCATAAGAACTGCGTATTTTTGTATTAAGATG
GAGTGTTTGTACAGCAGCTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis